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Pcdhga12 Gene Detail
Summary
  • Symbol
    Pcdhga12
  • Name
    protocadherin gamma subfamily A, 12
  • Synonyms
    pc2c, Pcdh13
  • Feature Type
    protein coding gene
  • IDs
    MGI:1935229
    NCBI Gene: 93724
  • Member of
    Pcdhg cluster
  • Gene Overview
    MyGene.info: PCDHGA12
Location & Maps
more
  • Sequence Map
    Chr18:37765580-37841873 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      76294 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    PCDHGA12, protocadherin gamma subfamily A, 12
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PCDHGA12, protocadherin gamma subfamily A, 12
    Orthology source: HomoloGene
  • Synonyms
    CDH21, FIB3, PCDH-GAMMA-A12
  • Links
    NCBI Gene ID: 26025
    neXtProt AC: NX_O60330

  • Chr Location
    5q31; chr5:141430591-141512979 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050866 VEGA Gene Model | MGI Sequence Detail 76294 C57BL/6J ±  kb
transcript OTTMUST00000128882 VEGA | MGI Sequence Detail 5080 Not Applicable  
polypeptide OTTMUSP00000069306 VEGA | MGI Sequence Detail 932 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    697 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    Genomic 2
    cDNA 8
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:1353490
References
more
  • Summaries
    All 21
    Developmental Gene Expression 7
    Gene Ontology 2
  • Earliest
    J:60527 Hirano S, et al., Protocadherin 2C: a new member of the protocadherin 2 subfamily expressed in a redundant manner with OL-protocadherin in the developing brain. Biochem Biophys Res Commun. 1999 Jul 14;260(3):641-5
  • Latest
    J:195283 Ledderose J, et al., Maturation of postnatally generated olfactory bulb granule cells depends on functional gamma-protocadherin expression. Sci Rep. 2013;3:1514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/17/2016
MGI 6.03
The Jackson Laboratory