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Pcdhga11 Gene Detail
Summary
  • Symbol
    Pcdhga11
  • Name
    protocadherin gamma subfamily A, 11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1935228
    NCBI Gene: 93723
  • Member of
    Pcdhg cluster
  • Gene Overview
    MyGene.info: PCDHGA11
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37755773-37841873 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.62 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    872 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1935228
protein coding gene Chr18:37755731-37841873 (.)
129S1/SvImJ MGP_129S1SvImJ_G0024349
protein coding gene Chr18:36162665-36259977 (+)
A/J MGP_AJ_G0024316
protein coding gene Chr18:34924155-35011794 (+)
AKR/J MGP_AKRJ_G0024285
protein coding gene Chr18:35880966-35972570 (+)
BALB/cJ MGP_BALBcJ_G0024316
protein coding gene Chr18:34990414-35077409 (+)
C3H/HeJ MGP_C3HHeJ_G0024082
protein coding gene Chr18:35951032-36038769 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024758
protein coding gene Chr18:37461077-37559702 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022197
protein coding gene Chr18:34940640-35028291 (+)
CAST/EiJ MGP_CASTEiJ_G0023557
protein coding gene Chr18:35886674-35977834 (+)
CBA/J MGP_CBAJ_G0024052
protein coding gene Chr18:38574069-38667943 (+)
DBA/2J MGP_DBA2J_G0024182
protein coding gene Chr18:34525084-34611340 (+)
FVB/NJ MGP_FVBNJ_G0024148
protein coding gene Chr18:34233802-34321591 (+)
LP/J MGP_LPJ_G0024266
protein coding gene Chr18:36233614-36321813 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024179
protein coding gene Chr18:39837352-39929365 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024807
protein coding gene Chr18:35736050-35837204 (+)
PWK/PhJ MGP_PWKPhJ_G0023301
protein coding gene Chr18:34728777-34819114 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023106
protein coding gene Chr18:35964632-36054330 (+)
WSB/EiJ MGP_WSBEiJ_G0023620
protein coding gene Chr18:35640954-35737854 (+)



Homology
more
  • Human Ortholog
    PCDHGA11, protocadherin gamma subfamily A, 11
  • Vertebrate Orthologs
    6
  • Human Ortholog
    PCDHGA11, protocadherin gamma subfamily A, 11
    Orthology source: HomoloGene
  • Synonyms
    PCDH-GAMMA-A11
  • Links
    NCBI Gene ID: 56105
    neXtProt AC: NX_Q9Y5H2
    UniProt: Q9Y5H2

  • Chr Location
    5q31.3; chr5:141420970-141512979 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93723 NCBI Gene Model | MGI Sequence Detail 86101 C57BL/6J ±  kb
transcript NM_033594 RefSeq | MGI Sequence Detail 4764 C57BL/6  
polypeptide NP_291072 RefSeq | MGI Sequence Detail 933 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4
References
more
  • Summaries
    All 16
    Developmental Gene Expression 2
    Gene Ontology 3
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:195283 Ledderose J, et al., Maturation of postnatally generated olfactory bulb granule cells depends on functional gamma-protocadherin expression. Sci Rep. 2013;3:1514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory