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Pcdhga5 Gene Detail
Summary
  • Symbol
    Pcdhga5
  • Name
    protocadherin gamma subfamily A, 5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1935217
    NCBI Gene: 93713
  • Member of
    Pcdhg cluster
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37694501-37841870 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.55 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1812 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1935217
protein coding gene Chr18:37694380-37841873 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024339
protein coding gene Chr18:36097668-36259977 (+)
A/J MGP_AJ_G0024307
protein coding gene Chr18:34862719-35011794 (+)
AKR/J MGP_AKRJ_G0024275
protein coding gene Chr18:35819477-35972570 (+)
BALB/cJ MGP_BALBcJ_G0024306
protein coding gene Chr18:34928862-35077409 (+)
C3H/HeJ MGP_C3HHeJ_G0024072
protein coding gene Chr18:35883069-36038769 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024748
protein coding gene Chr18:37394500-37559702 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022187
protein coding gene Chr18:34877839-35028291 (+)
CAST/EiJ MGP_CASTEiJ_G0023548
protein coding gene Chr18:35820134-35977834 (+)
CBA/J MGP_CBAJ_G0024042
protein coding gene Chr18:38503459-38667943 (+)
DBA/2J MGP_DBA2J_G0024172
protein coding gene Chr18:34463332-34611340 (+)
FVB/NJ MGP_FVBNJ_G0024138
protein coding gene Chr18:34172350-34321591 (+)
LP/J MGP_LPJ_G0024256
protein coding gene Chr18:36171863-36321813 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024169
protein coding gene Chr18:39772762-39929365 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024797
protein coding gene Chr18:35674706-35837204 (+)
PWK/PhJ MGP_PWKPhJ_G0023292
protein coding gene Chr18:34665958-34819114 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023097
protein coding gene Chr18:35901097-36054330 (+)
WSB/EiJ MGP_WSBEiJ_G0023610
protein coding gene Chr18:35573275-35737854 (+)



Homology
more
  • Human Ortholog
    PCDHGA5, protocadherin gamma subfamily A, 5
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PCDHGA5, protocadherin gamma subfamily A, 5
    Orthology source: HomoloGene
  • Synonyms
    CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
  • Links
    NCBI Gene ID: 56110
    neXtProt AC: NX_Q9Y5G8
    UniProt: Q9Y5G8

  • Chr Location
    5q31.3; chr5:141364331-141512979 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93713 NCBI Gene Model | MGI Sequence Detail 147370 C57BL/6J ±  kb
transcript NM_033588 RefSeq | MGI Sequence Detail 4666 C57BL/6  
polypeptide NP_291066 RefSeq | MGI Sequence Detail 932 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    Genomic 2
    cDNA 5
References
more
  • Summaries
    All 17
    Developmental Gene Expression 2
    Gene Ontology 1
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:195283 Ledderose J, et al., Maturation of postnatally generated olfactory bulb granule cells depends on functional gamma-protocadherin expression. Sci Rep. 2013;3:1514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory