Pcdhga5 MGI Mouse Gene Detail - MGI:1935217 - protocadherin gamma subfamily A, 5

Symbol

Pcdhga5
Name

protocadherin gamma subfamily A, 5

Feature Type

protein coding gene
IDs

MGI:1935217
NCBI Gene: 93713
Member of

Pcdhg cluster
Alliance

gene page
Transcription Start Sites

2 TSS
Regulated by

Rr72, Rr73, Rr74 ... (4 regulatory regions)

Sequence Map

Chr18:37827433-37974926 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 18, 19.55 cM
Mapping Data

3 experiments

SNPs within 2kb

4539 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1935217	protein coding gene	Chr18:37827428-37974926 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024339	protein coding gene	Chr18:36097668-36259977 (+)
A/J	MGP_AJ_G0024307	protein coding gene	Chr18:34862719-35011794 (+)
AKR/J	MGP_AKRJ_G0024275	protein coding gene	Chr18:35819477-35972570 (+)
BALB/cJ	MGP_BALBcJ_G0024306	protein coding gene	Chr18:34928862-35077409 (+)
C3H/HeJ	MGP_C3HHeJ_G0024072	protein coding gene	Chr18:35883069-36038769 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024748	protein coding gene	Chr18:37394500-37559702 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022187	protein coding gene	Chr18:34877839-35028291 (+)
CAST/EiJ	MGP_CASTEiJ_G0023548	protein coding gene	Chr18:35820134-35977834 (+)
CBA/J	MGP_CBAJ_G0024042	protein coding gene	Chr18:38503459-38667943 (+)
DBA/2J	MGP_DBA2J_G0024172	protein coding gene	Chr18:34463332-34611340 (+)
FVB/NJ	MGP_FVBNJ_G0024138	protein coding gene	Chr18:34172350-34321591 (+)
LP/J	MGP_LPJ_G0024256	protein coding gene	Chr18:36171863-36321813 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024169	protein coding gene	Chr18:39772762-39929365 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024797	protein coding gene	Chr18:35674706-35837204 (+)
PWK/PhJ	MGP_PWKPhJ_G0023292	protein coding gene	Chr18:34665958-34819114 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023097	protein coding gene	Chr18:35901097-36054330 (+)
WSB/EiJ	MGP_WSBEiJ_G0023610	protein coding gene	Chr18:35573275-35737854 (+)

Human Ortholog

PCDHGA5, protocadherin gamma subfamily A, 5

Vertebrate Orthologs

10

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

PCDHGA5, protocadherin gamma subfamily A, 5
Synonyms

CDH-GAMMA-A5, ME3, PCDH-GAMMA-A5
Links

HGNC:8703

NCBI Gene ID: 56110

UniProt: Q9Y5G8
Chr Location

5q31.3; chr5:141364162-141512975 (+) GRCh38

MGI Vertebrate Homology

Pcdhga5 stringent orthology
1 human;1 mouse;9 zebrafish
HCOP

vertebrate homology predictions: PCDHGA5
Gene Tree

Pcdhga5

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

5
Endonuclease-mediated

1
Targeted

4
Genomic Mutations

5 involving Pcdhga5
Incidental Mutations

CvDC
Find Mice (IMSR)

74 strains or lines available

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All GO Annotations

4
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

709
Tissues

2
cDNA Data

5
Literature Summary

4

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

34
RefSeq

2
UniProt

3
CCDS

CCDS79627.1

Ensembl

ENSMUSG00000103567 (Evidence)
NCBI Gene

93713

			Length	Strain/Species	Flank
genomic	ENSMUSG00000103567	Ensembl Gene Model \| MGI Sequence Detail	147494	C57BL/6J	± kb
transcript	ENSMUST00000193414	Ensembl \| MGI Sequence Detail	4664	Not Applicable
polypeptide	ENSMUSP00000141893	Ensembl \| MGI Sequence Detail	932	Not Applicable

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UniProt

3 Sequences
InterPro Domains

IPR020894 Cadherin conserved site

IPR031904 Cadherin, C-terminal catenin-binding domain

IPR032455 Cadherin, cytoplasmic C-terminal domain

IPR002126 Cadherin-like

IPR015919 Cadherin-like superfamily

IPR013164 Cadherin, N-terminal

IPR050174 Protocadherin/Cadherin-related Cell Adhesion
GlyGen

Q91XY3 1 site, 1 N-linked glycan (1 site)

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All nucleic 10

Genomic 2

cDNA 5

Primer pair 3

Summaries

All 24

Developmental Gene Expression 4

Gene Ontology 2

Phenotypes 4
Earliest

J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
Latest

J:332241 Kobayashi H, et al., Isoform requirement of clustered protocadherin for preventing neuronal apoptosis and neonatal lethality. iScience. 2023 Jan 20;26(1):105766

Pcdhga5 expression regulated by:

Feature	Feature Type	Location	Reference
Rr72, regulatory region 72	unclassified other genome feature	Chr18, Syntenic	J:277249
Rr73, regulatory region 73	unclassified other genome feature	Chr18, Syntenic	J:277249
Rr74, regulatory region 74	unclassified other genome feature	Chr18, Syntenic	J:277249
Rr75, regulatory region 75	unclassified other genome feature	Chr18, Syntenic	J:277249

TSS for Pcdhga5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150720	Chr18:37827413-37827441 (+)	-6 bp
Tssr150721	Chr18:37827460-37827476 (+)	35 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 03/18/2025 MGI 6.24