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Pcdhga3 Gene Detail
Summary
  • Symbol
    Pcdhga3
  • Name
    protocadherin gamma subfamily A, 3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1935215
    NCBI Gene: 93711
  • Member of
    Pcdhg cluster
Location & Maps
more
  • Sequence Map
    Chr18:37674307-37841873 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      167567 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.55 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    PCDHGA3, protocadherin gamma subfamily A, 3
  • Vertebrate Orthologs
    6
  • Human Ortholog
    PCDHGA3, protocadherin gamma subfamily A, 3
    Orthology source: HomoloGene
  • Synonyms
    PCDH-GAMMA-A3
  • Links
    NCBI Gene ID: 56112
    neXtProt AC: NX_Q9Y5H0

  • Chr Location
    5q31; chr5:141344034-141512979 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050801 VEGA Gene Model | MGI Sequence Detail 167567 C57BL/6J ±  kb
transcript OTTMUST00000128746 VEGA | MGI Sequence Detail 4720 Not Applicable  
polypeptide OTTMUSP00000069237 VEGA | MGI Sequence Detail 928 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2068 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    Genomic 2
    cDNA 1
References
more
  • Summaries
    All 15
    Developmental Gene Expression 2
    Gene Ontology 2
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:195283 Ledderose J, et al., Maturation of postnatally generated olfactory bulb granule cells depends on functional gamma-protocadherin expression. Sci Rep. 2013;3:1514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory