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Pcdhga1 Gene Detail
Summary
  • Symbol
    Pcdhga1
  • Name
    protocadherin gamma subfamily A, 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1935212
    NCBI Gene: 93709
  • Member of
    Pcdhg cluster
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37661945-37841870 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.54 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2157 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1935212
protein coding gene Chr18:37661793-37841873 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024333
protein coding gene Chr18:36064426-36259977 (+)
A/J MGP_AJ_G0024301
protein coding gene Chr18:34825129-35011794 (+)
AKR/J MGP_AKRJ_G0024269
protein coding gene Chr18:35785137-35972570 (+)
BALB/cJ MGP_BALBcJ_G0024300
protein coding gene Chr18:34894903-35077409 (+)
C3H/HeJ MGP_C3HHeJ_G0024066
protein coding gene Chr18:35848458-36038769 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024742
protein coding gene Chr18:37355861-37559702 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022181
protein coding gene Chr18:34845814-35028291 (+)
CAST/EiJ MGP_CASTEiJ_G0023542
protein coding gene Chr18:35787315-35977834 (+)
CBA/J MGP_CBAJ_G0024036
protein coding gene Chr18:38451979-38667943 (+)
DBA/2J MGP_DBA2J_G0024166
protein coding gene Chr18:34424364-34611340 (+)
FVB/NJ MGP_FVBNJ_G0024132
protein coding gene Chr18:34139512-34321591 (+)
LP/J MGP_LPJ_G0024250
protein coding gene Chr18:36139529-36321813 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024163
protein coding gene Chr18:39739619-39929365 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024791
protein coding gene Chr18:35639997-35837204 (+)
PWK/PhJ MGP_PWKPhJ_G0023286
protein coding gene Chr18:34633500-34819114 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023091
protein coding gene Chr18:35867756-36054330 (+)
WSB/EiJ MGP_WSBEiJ_G0023604
protein coding gene Chr18:35537699-35737854 (+)



Homology
more
  • Human Ortholog
    PCDHGA1, protocadherin gamma subfamily A, 1
  • Vertebrate Orthologs
    4
  • Human Ortholog
    PCDHGA1, protocadherin gamma subfamily A, 1
    Orthology source: HomoloGene
  • Synonyms
    PCDH-GAMMA-A1
  • Links
    NCBI Gene ID: 56114
    neXtProt AC: NX_Q9Y5H4
    UniProt: Q9Y5H4

  • Chr Location
    5q31.3; chr5:141330685-141512979 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    2 phenotype references
Mice homozygous for a null/reporter allele are viable and fertile.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93709 NCBI Gene Model | MGI Sequence Detail 179926 C57BL/6J ±  kb
transcript NM_033584 RefSeq | MGI Sequence Detail 4707 C57BL/6  
polypeptide NP_291062 RefSeq | MGI Sequence Detail 931 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    Genomic 2
    cDNA 5
References
more
  • Summaries
    All 17
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:195283 Ledderose J, et al., Maturation of postnatally generated olfactory bulb granule cells depends on functional gamma-protocadherin expression. Sci Rep. 2013;3:1514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory