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Ube2n
Gene Detail
Symbol

Name
ID
Ube2n
ubiquitin-conjugating enzyme E2N
MGI:1934835
Synonyms
1500026J17Rik, UBC13
Feature Type
protein coding gene
Genetic Map
Chromosome 10
49.41 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:95515162-95545658 bp, + strand
From NCBI annotation of GRCm38

  30497 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128406  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Protein SuperFamily: ubiquitin-conjugating enzyme E2
Gene Tree: Ube2n

Human
homologs
Human Homolog UBE2N, ubiquitin-conjugating enzyme E2N
NCBI Gene ID 7334
neXtProt AC  NX_P61088
Human Synonyms  HEL-S-71, UBC13, UbcH13, UbcH-ben, UBCHBEN; UBC13
Human Chr (Location)  12q22; chr12:93408312-93442250 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(25) : Gene trapped(22) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous disruption of this gene causes early embryonic lethality. Mice heterozygous for a gene trap allele show increased resistance to LPS-induced lethality while cultured immune cells display blunted LPS-inducible cytokine secretion and impaired activation of TRAF-mediated signal transduction.
 
Interactions
Ube2n interacts with 347 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (43 annotations)
Process cellular response to DNA damage stimulus, DNA double-strand break processing, ...
Component cytoplasm, extracellular vesicular exosome, ...
Function ATP binding, ligase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (2)    Tissues (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 2
cDNA source data(13)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(6)
Other database
links
Ensembl Gene ModelENSMUSG00000074781 (Evidence)
Entrez Gene93765 (Evidence)
DFCITC1629288, TC1606003, TC1574290
DoTSDT.101287518, DT.50314946, DT.534626
EC6.3.2.19
Consensus CDS ProjectCCDS48677.1
International Mouse Knockout Project StatusUbe2n
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 93765 NCBI Gene Model | MGI Sequence Detail 30497 C57BL/6J ±  kb
transcript NM_080560 RefSeq | MGI Sequence Detail 3851 C57BL/6 
polypeptide P61089 UniProt | EBI | MGI Sequence Detail 152 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(195 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023313 Ubiquitin-conjugating enzyme, active site
InterPro IPR000608 Ubiquitin-conjugating enzyme, E2
InterPro IPR016135 Ubiquitin-conjugating enzyme/RWD-like
Protein Ontology PR:000003289 ubiquitin-conjugating enzyme E2 N
Graphical View of Protein Domain Structure
References
(Earliest) J:214866 JACKSON BR, et al., Recurrent carcinoma of the rectum, surgical treatment. Calif Med. 1959 Sep;91:149-50
(Latest) J:205449 Dauphinee SM, et al., SASH1 is a scaffold molecule in endothelial TLR4 signaling. J Immunol. 2013 Jul 15;191(2):892-901
All references(52)
Other
accession IDs
MGI:2143895, MGI:2144921

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory