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Clptm1
Gene Detail
 Symbol
Name
ID
Clptm1
cleft lip and palate associated transmembrane protein 1
MGI:1927155
Synonyms HS9, N14
Feature Type protein coding gene
Genetic Map
Chromosome 7
9.93 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:19631581-19665030 bp, - strand
From Ensembl annotation of GRCm38

  33450 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37464  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Clptm1

Human
homologs
Human Homolog CLPTM1, cleft lip and palate associated transmembrane protein 1
NCBI Gene ID 1209
neXtProt AC  NX_O96005
Human Chr (Location)  19q13.3; chr19:44954585-44993346 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(9) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Clptm1 interacts with 261 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process cell differentiation, multicellular organismal development, ...
Component external side of plasma membrane, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (7)    Tissues (5)   
Theiler Stages: 22, 28
Assay TypeResults
Immunohistochemistry 7
cDNA source data(191)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(191) cDNA(191)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000002981 (Evidence)
Entrez Gene56457 (Evidence)
UniGene290960
DFCITC1572470, TC1667479, TC1717818
DoTSDT.101379220, DT.110995782, DT.537883, DT.94303640
NIA Mouse Gene IndexU028232
Consensus CDS ProjectCCDS39800.1
International Mouse Knockout Project StatusClptm1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000002981 Ensembl Gene Model | MGI Sequence Detail 33450 C57BL/6J ±  kb
transcript ENSMUST00000055242 Ensembl | MGI Sequence Detail 4130 Not Applicable 
polypeptide ENSMUSP00000051293 Ensembl | MGI Sequence Detail 664 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(247 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008429 Cleft lip and palate transmembrane 1
Protein Ontology PR:000005602 cleft lip and palate transmembrane protein 1
References (Earliest) J:135028 Takeuchi T, et al., Characterization of a 50 kDa surface membrane protein on thymic stromal cells as an important factor for early T cell development. Int Immunol. 1995 Apr;7(4):583-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory