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Clptm1 Gene Detail
Summary
  • Symbol
    Clptm1
  • Name
    cleft lip and palate associated transmembrane protein 1
  • Synonyms
    HS9, N14
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927155
    NCBI Gene: 56457
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:19631580-19665030 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 9.93 cM, cytoband A2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    247 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927155
protein coding gene Chr7:19631571-19665033 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031788
protein coding gene Chr7:17663976-17702859 (-)
A/J MGP_AJ_G0031764
protein coding gene Chr7:17280878-17314346 (-)
AKR/J MGP_AKRJ_G0031690
protein coding gene Chr7:17760627-17794055 (-)
BALB/cJ MGP_BALBcJ_G0031769
protein coding gene Chr7:17487608-17521464 (-)
C3H/HeJ MGP_C3HHeJ_G0031491
protein coding gene Chr7:18024090-18060800 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032235
protein coding gene Chr7:18534526-18569919 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029301
protein coding gene Chr7:18928870-18963051 (-)
CAST/EiJ MGP_CASTEiJ_G0030834
protein coding gene Chr7:14458414-14497004 (-)
CBA/J MGP_CBAJ_G0031453
protein coding gene Chr7:19210586-19249562 (-)
DBA/2J MGP_DBA2J_G0031608
protein coding gene Chr7:17232001-17266706 (-)
FVB/NJ MGP_FVBNJ_G0031560
protein coding gene Chr7:17097435-17135926 (-)
LP/J MGP_LPJ_G0031691
protein coding gene Chr7:17980726-18014219 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031596
protein coding gene Chr7:19039106-19076253 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032263
protein coding gene Chr7:17367220-17404706 (-)
PWK/PhJ MGP_PWKPhJ_G0030558
protein coding gene Chr7:14329041-14363198 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030385
protein coding gene Chr7:12079074-12116556 (-)
WSB/EiJ MGP_WSBEiJ_G0030934
protein coding gene Chr7:17587606-17622444 (-)



Homology
more
  • Human Ortholog
    CLPTM1, CLPTM1, transmembrane protein
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CLPTM1, CLPTM1, transmembrane protein
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 1209
    neXtProt AC: NX_O96005
    UniProt: O96005

  • Chr Location
    19q13.32; chr19:44954585-44993346 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56457 NCBI Gene Model | MGI Sequence Detail 33451 C57BL/6J ±  kb
transcript NM_019649 RefSeq | MGI Sequence Detail 4147 C57BL/6  
polypeptide Q8VBZ3 UniProt | EBI | MGI Sequence Detail 664 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 192
    cDNA 192

    Microarray probesets 4
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:135028 Takeuchi T, et al., Characterization of a 50 kDa surface membrane protein on thymic stromal cells as an important factor for early T cell development. Int Immunol. 1995 Apr;7(4):583-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory