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Arid1b
Gene Detail
 Symbol
Name
ID
Arid1b
AT rich interactive domain 1B (SWI-like)
MGI:1926129
Synonyms 9330189K18Rik, B230217J03Rik, mKIAA1235
Feature Type protein coding gene
Genetic Map
Chromosome 17
2.83 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:4994332-5347656 bp, + strand
From VEGA annotation of GRCm38

  353325 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32344  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Arid1b

Human
homologs
Human Homolog ARID1B, AT rich interactive domain 1B (SWI1-like)
NCBI Gene ID 57492
neXtProt AC  NX_Q8NFD5
Human Synonyms  6A3-5, BAF250B, BRIGHT, DAN15, ELD/OSA1, MRD12, OSA2, P250R
Human Chr (Location)  6q25.1; chr6:156777846-157210779 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human ARID1B
Alleles
and
phenotypes
All alleles(61) : Gene trapped(59) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process chromatin remodeling
Component cytoplasm, nBAF complex, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (93)    Tissues (93)    Images (17)
Theiler Stages: 22
Assay TypeResults
RNA in situ 93
cDNA source data(59)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(60) cDNA(60)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000023805 (Evidence)
Ensembl Gene ModelENSMUSG00000069729 (Evidence)
Entrez Gene239985 (Evidence)
UniGene133401
DFCITC1601112, TC1621559, TC1635080, TC1639705, TC1667771, TC1675544
DoTSDT.101726059, DT.102554064, DT.110580496, DT.40167060, DT.87054851, DT.94144421, DT.94251134
NIA Mouse Gene IndexU067831, U074437, U115883
Consensus CDS ProjectCCDS49929.1
International Mouse Knockout Project StatusArid1b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023805 VEGA Gene Model | MGI Sequence Detail 353325 C57BL/6J ±  kb
transcript OTTMUST00000059181 VEGA | MGI Sequence Detail 7150 Not Applicable 
polypeptide OTTMUSP00000028765 VEGA | MGI Sequence Detail 2243 Not Applicable 

For the selected sequences
All sequences(70) RefSeq(10) UniProt(6)
Polymorphisms SNPs within 2kb(2322 from dbSNP Build 137)    SNPs within 2kb including multiple locations(2326)
Protein-related
information
ResourceIDDescription
InterPro IPR001606 ARID/BRIGHT DNA-binding domain
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR021906 Protein of unknown function DUF3518
Protein Ontology PR:000004263 AT-rich interactive domain-containing protein 1B
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:199644 Staahl BT, et al., Kinetic analysis of npBAF to nBAF switching reveals exchange of SS18 with CREST and integration with neural developmental pathways. J Neurosci. 2013 Jun 19;33(25):10348-61
All references(39)
Other
accession IDs
MGI:1924763, MGI:2146926

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory