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Arid1b
Gene Detail
Symbol

Name
ID
Arid1b
AT rich interactive domain 1B (SWI-like)
MGI:1926129
Synonyms
9330189K18Rik, B230217J03Rik, mKIAA1235
Feature Type
protein coding gene
Genetic Map
Chromosome 17
2.83 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:4994332-5347656 bp, + strand
From VEGA annotation of GRCm38

  353325 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32344  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: ARID1B
Gene Tree: Arid1b

Human
homologs
ARID1B, AT rich interactive domain 1B (SWI1-like)
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 57492
neXtProt AC: NX_Q8NFD5

Human Synonyms: 6A3-5, BAF250B, BRIGHT, DAN15, ELD/OSA1, MRD12, OSA2, P250R

Human Chr (Location): 6q25.1; chr6:156777892-157210779 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human ARID1B

Mutations,
alleles, and
phenotypes
All mutations/alleles(61) : Gene trapped(59) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Arid1b interacts with 463 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process chromatin remodeling
Component BAF-type complex, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (93)    Tissues (93)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 93
cDNA source data(59)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase arid1b    NEW 
Molecular
reagents
All nucleic(60) cDNA(60)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000023805 (Evidence)
Ensembl Gene Model ENSMUSG00000069729 (Evidence)
Entrez Gene 239985 (Evidence)
UniGene 133401
DFCI TC1675544, TC1639705, TC1667771, TC1621559, TC1635080, TC1601112
DoTS DT.101726059, DT.94144421, DT.94251134, DT.40167060, DT.87054851, DT.102554064, DT.110580496
NIA Mouse Gene Index U067831, U074437, U115883
Consensus CDS Project CCDS49929.1
International Mouse Phenotyping Consortium Status Arid1b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023805 VEGA Gene Model | MGI Sequence Detail 353325 C57BL/6J ±  kb
transcript OTTMUST00000059181 VEGA | MGI Sequence Detail 7150 Not Applicable 
polypeptide OTTMUSP00000028765 VEGA | MGI Sequence Detail 2243 Not Applicable 

For the selected sequences
All sequences(68) RefSeq(8) UniProt(6)
Polymorphisms
SNPs within 2kb(2322 from dbSNP Build 137)    SNPs within 2kb including multiple locations(2326)
Protein-related
information
ResourceIDDescription
InterPro IPR001606 ARID/BRIGHT DNA-binding domain
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR021906 Protein of unknown function DUF3518
Protein Ontology PR:000004263 AT-rich interactive domain-containing protein 1B
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:212358 Singh AP, et al., Analysis of the SWI/SNF chromatin-remodeling complex during early heart development and BAF250a repression cardiac gene transcription during P19 cell differentiation. Nucleic Acids Res. 2014 Mar;42(5):2958-75
All references(39)
Other
accession IDs
MGI:1924763, MGI:2146926

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory