About   Help   FAQ
Atrip Gene Detail
Summary
  • Symbol
    Atrip
  • Name
    ATR interacting protein
  • Synonyms
    6620401K05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925349
    NCBI Gene: 235610
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr9:109059747-109074530 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 59.63 cM, cytoband F2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925349
protein coding gene Chr9:109059747-109074530 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035324
protein coding gene Chr9:111016563-111032276 (-)
A/J MGP_AJ_G0035303
protein coding gene Chr9:106932851-106947243 (-)
AKR/J MGP_AKRJ_G0035235
protein coding gene Chr9:109626368-109640760 (-)
BALB/cJ MGP_BALBcJ_G0035297
protein coding gene Chr9:106632956-106647348 (-)
C3H/HeJ MGP_C3HHeJ_G0035007
protein coding gene Chr9:110016039-110030944 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035817
protein coding gene Chr9:114043105-114057428 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032715
protein coding gene Chr9:104339340-104354142 (-)
CAST/EiJ MGP_CASTEiJ_G0034318
protein coding gene Chr9:109989652-110003991 (-)
CBA/J MGP_CBAJ_G0034975
protein coding gene Chr9:118056006-118072391 (-)
DBA/2J MGP_DBA2J_G0035136
protein coding gene Chr9:106388078-106403094 (-)
FVB/NJ MGP_FVBNJ_G0035084
protein coding gene Chr9:105208049-105222578 (-)
LP/J MGP_LPJ_G0035212
protein coding gene Chr9:111202220-111216545 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035123
protein coding gene Chr9:119610036-119624414 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035838
protein coding gene Chr9:109895802-109910173 (-)
PWK/PhJ MGP_PWKPhJ_G0034025
protein coding gene Chr9:106724667-106739827 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033860
protein coding gene Chr9:109960915-109975709 (-)
WSB/EiJ MGP_WSBEiJ_G0034439
protein coding gene Chr9:109793153-109808987 (-)



Homology
more
  • Human Ortholog
    ATRIP, ATR interacting protein
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATRIP, ATR interacting protein
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 84126
    neXtProt AC: NX_Q8WXE1
    UniProt: Q8WXE1

  • Chr Location
    3p21.31; chr3:48446710-48465655 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 15601
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ATRIP
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 235610 NCBI Gene Model | MGI Sequence Detail 14784 C57BL/6J ±  kb
transcript NM_172774 RefSeq | MGI Sequence Detail 2572 C57BL/6  
polypeptide Q8BMG1 UniProt | EBI | MGI Sequence Detail 785 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 37
    cDNA 37

    Microarray probesets 1
References
more
  • Summaries
    All 33
    Gene Ontology 4
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:246066 Sundberg JP, et al., Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program. PLoS One. 2017;12(7):e0180682

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory