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Pramef12 Gene Detail
Summary
  • Symbol
    Pramef12
  • Name
    PRAME family member 12
  • Synonyms
    4930569K13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924882
    NCBI Gene: 77632
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:144391674-144408464 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 77.98 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924882
protein coding gene Chr4:144391674-144408467 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029090
protein coding gene Chr4:147751193-147769525 (-)
A/J MGP_AJ_G0029057
protein coding gene Chr4:141475155-141491913 (-)
AKR/J MGP_AKRJ_G0029005
protein coding gene Chr4:145455344-145472121 (-)
BALB/cJ MGP_BALBcJ_G0029072
protein coding gene Chr4:142128277-142145032 (-)
C3H/HeJ MGP_C3HHeJ_G0028791
protein coding gene Chr4:145902432-145921644 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029517
protein coding gene Chr4:152753383-152778787 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026769
protein coding gene Chr4:134171273-134187622 (-)
CAST/EiJ MGP_CASTEiJ_G0028207
protein coding gene Chr4:143977143-143996510 (-)
CBA/J MGP_CBAJ_G0028755
protein coding gene Chr4:157512249-157561461 (-)
DBA/2J MGP_DBA2J_G0028903
protein coding gene Chr4:141703703-141720691 (-)
FVB/NJ MGP_FVBNJ_G0028865
protein coding gene Chr4:140837021-140853766 (-)
LP/J MGP_LPJ_G0028994
protein coding gene Chr4:147812973-147830685 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028895
protein coding gene Chr4:161091330-161110385 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029554
protein coding gene Chr4:145918417-145938063 (-)
PWK/PhJ MGP_PWKPhJ_G0027927
protein coding gene Chr4:138183380-138200910 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027761
protein coding gene Chr4:141197921-141214436 (-)
WSB/EiJ MGP_WSBEiJ_G0028286
protein coding gene Chr4:146182840-146200140 (-)



Homology
more
  • Human Ortholog
    PRAMEF12, PRAME family member 12
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PRAMEF12, PRAME family member 12
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 390999
    neXtProt AC: NX_O95522
    UniProt: O95522

  • Chr Location
    1p36.21; chr1:12774848-12777906 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Gene trapped
    6
  • Targeted
    5
  • Genomic Mutations
    2 involving Pramef12
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028591 Ensembl Gene Model | MGI Sequence Detail 16791 C57BL/6J ±  kb
transcript ENSMUST00000030326 Ensembl | MGI Sequence Detail 2460 Not Applicable  
polypeptide ENSMUSP00000030326 Ensembl | MGI Sequence Detail 463 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR032675 Leucine-rich repeat domain superfamily
    IPR026271 PRAME family
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140472, MGI:2140703
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory