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Pramel13 Gene Detail
Summary
  • Symbol
    Pramel13
  • Name
    PRAME like 13
  • Synonyms
    4930569K13Rik, Pramef12
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924882
    NCBI Gene: 77632
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:144391674-144408464 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 77.98 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924882
protein coding gene Chr4:144391674-144408467 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029090
protein coding gene Chr4:147751193-147769525 (-)
A/J MGP_AJ_G0029057
protein coding gene Chr4:141475155-141491913 (-)
AKR/J MGP_AKRJ_G0029005
protein coding gene Chr4:145455344-145472121 (-)
BALB/cJ MGP_BALBcJ_G0029072
protein coding gene Chr4:142128277-142145032 (-)
C3H/HeJ MGP_C3HHeJ_G0028791
protein coding gene Chr4:145902432-145921644 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029517
protein coding gene Chr4:152753383-152778787 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026769
protein coding gene Chr4:134171273-134187622 (-)
CAST/EiJ MGP_CASTEiJ_G0028207
protein coding gene Chr4:143977143-143996510 (-)
CBA/J MGP_CBAJ_G0028755
protein coding gene Chr4:157512249-157561461 (-)
DBA/2J MGP_DBA2J_G0028903
protein coding gene Chr4:141703703-141720691 (-)
FVB/NJ MGP_FVBNJ_G0028865
protein coding gene Chr4:140837021-140853766 (-)
LP/J MGP_LPJ_G0028994
protein coding gene Chr4:147812973-147830685 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028895
protein coding gene Chr4:161091330-161110385 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029554
protein coding gene Chr4:145918417-145938063 (-)
PWK/PhJ MGP_PWKPhJ_G0027927
protein coding gene Chr4:138183380-138200910 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027761
protein coding gene Chr4:141197921-141214436 (-)
WSB/EiJ MGP_WSBEiJ_G0028286
protein coding gene Chr4:146182840-146200140 (-)



Homology
more
  • Human Ortholog
    PRAMEF12, PRAME family member 12
  • Vertebrate Orthologs
    5
  • Human Ortholog
    PRAMEF12, PRAME family member 12
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 390999
    neXtProt AC: NX_O95522
    UniProt: O95522

  • Chr Location
    1p36.21; chr1:12774848-12777906 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Gene trapped
    6
  • Targeted
    5
  • Genomic Mutations
    2 involving Pramel13
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028591 Ensembl Gene Model | MGI Sequence Detail 16791 C57BL/6J ±  kb
transcript ENSMUST00000030326 Ensembl | MGI Sequence Detail 2460 Not Applicable  
polypeptide ENSMUSP00000030326 Ensembl | MGI Sequence Detail 463 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR032675 Leucine-rich repeat domain superfamily
    IPR026271 PRAME family
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140472, MGI:2140703
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:282232 Wang Z, et al., Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in mice. Nat Commun. 2019 Nov 15;10(1):5196

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/30/2020
MGI 6.15
The Jackson Laboratory