B230206L02Rik Gene Detail

Summary

• Symbol
  B230206L02Rik
• Name
  RIKEN cDNA B230206L02 gene
• Synonyms
  Gm11519

• Feature Type
  lncRNA gene
• IDs
  MGI:1924598
  NCBI Gene: 100039440
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:94024282-94046596 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.90 cM

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1924598	lncRNA gene	Chr11:94024244-94046605 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015194	unclassified non-coding RNA gene	Chr11:96189507-96215532 (+)
A/J	MGP_AJ_G0015168	unclassified non-coding RNA gene	Chr11:92358184-92382080 (+)
AKR/J	MGP_AKRJ_G0015131	unclassified non-coding RNA gene	Chr11:95236049-95258311 (+)
BALB/cJ	MGP_BALBcJ_G0015130	unclassified non-coding RNA gene	Chr11:92794834-92817330 (+)
C3H/HeJ	MGP_C3HHeJ_G0014954	unclassified non-coding RNA gene	Chr11:95308041-95331568 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015587	unclassified non-coding RNA gene	Chr11:99182988-99207735 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013330	unclassified non-coding RNA gene	Chr11:89855284-89878245 (+)
CAST/EiJ	MGP_CASTEiJ_G0014507	unclassified non-coding RNA gene	Chr11:96010945-96035451 (+)
CBA/J	MGP_CBAJ_G0014933	unclassified non-coding RNA gene	Chr11:103288128-103319226 (+)
DBA/2J	MGP_DBA2J_G0015026	unclassified non-coding RNA gene	Chr11:91934683-91957323 (+)
FVB/NJ	MGP_FVBNJ_G0015038	unclassified non-coding RNA gene	Chr11:91343519-91366543 (+)
LP/J	MGP_LPJ_G0015107	unclassified non-coding RNA gene	Chr11:96735151-96759696 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015064	unclassified non-coding RNA gene	Chr11:103351149-103377677 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015626	unclassified non-coding RNA gene	Chr11:95437368-95460573 (+)
PWK/PhJ	MGP_PWKPhJ_G0014299	unclassified non-coding RNA gene	Chr11:92858345-92882355 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014086	unclassified non-coding RNA gene	Chr11:95110944-95137157 (+)
WSB/EiJ	MGP_WSBEiJ_G0014610	unclassified non-coding RNA gene	Chr11:95320317-95345362 (+)

Homology

• Gene Tree
  B230206L02Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  267
• Gene trapped
  264
• Targeted
  3
• Genomic Mutations
  3 involving B230206L02Rik
• Find Mice (IMSR)
  18 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  3

• Ensembl
  ENSMUSG00000086003 (Evidence)
• NCBI Gene
  100039440

Representative Sequences			Length	Strain/Species
genomic	100039440	NCBI Gene Model | MGI Sequence Detail	22315	C57BL/6J
transcript	NR_167699	RefSeq | MGI Sequence Detail	718	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:3650305

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 8
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for B230206L02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3643	Chr11:94024252-94024295 (+)	-8 bp
Tssr104175	Chr11:94024305-94024316 (+)	29 bp
Tssr104176	Chr11:94028497-94028508 (+)	4,221 bp
Tssr104177	Chr11:94030743-94030746 (+)	6,463 bp