Arid2
Gene Detail

Symbol Name ID

Arid2 AT rich interactive domain 2 (ARID, RFX-like) MGI:1924294

Synonyms

1700124K17Rik, 4432409D24Rik, zipzap/p200

Feature Type

protein coding gene

Genetic Map

Chromosome 15

52.37 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr15:96287518-96404992 bp, + strand From VEGA annotation of GRCm38   117475 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:14601  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Arid2

Human homologs

Human Homolog		ARID2, AT rich interactive domain 2 (ARID, RFX-like)
NCBI Gene ID		196528
neXtProt AC		NX_Q68CP9
Human Synonyms		BAF200, p200
Human Chr (Location)		12q12; chr12:46123620-46301819 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(56) : Targeted(2) Gene trapped(54)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Process	nucleosome disassembly, positive regulation of transcription from RNA polymerase II promoter
Component	transcription factor complex
Function	transcription factor binding

External Resources: FuncBase

Expression

Literature Summary: (5 records)
Data Summary: Results (137)    Tissues (135)    Images (3)
Theiler Stages: 2, 3, 4, 5, 17, 21, 22, 23, 28

Assay Type	Results
RNA in situ	122
RT-PCR	15

cDNA source data(202)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(203) cDNA(202) Primer pair(1)
Microarray probesets(8)

Other database links

VEGA Gene Model	OTTMUSG00000017290 (Evidence)
Ensembl Gene Model	ENSMUSG00000033237 (Evidence)
Entrez Gene	77044 (Evidence)
UniGene	17166
DFCI	TC1576687, TC1593396, TC1598368, TC1602646, TC1604521, TC1677336
DoTS	DT.101239010, DT.101738458, DT.103586656, DT.103586729, DT.40150583
NIA Mouse Gene Index	U016607
Consensus CDS Project	CCDS37185.2
International Mouse Knockout Project Status	Arid2

Sequences

Length	Strain/Species
genomic	OTTMUSG00000017290	VEGA Gene Model | MGI Sequence Detail	117475	C57BL/6J
transcript	OTTMUST00000041922	VEGA | MGI Sequence Detail	8507	Not Applicable
polypeptide	OTTMUSP00000018854	VEGA | MGI Sequence Detail	1828	Not Applicable

All sequences(58) RefSeq(2) UniProt(6)

Polymorphisms

SNPs(143 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001606	ARID/BRIGHT DNA-binding domain
InterPro	IPR003150	DNA-binding RFX-type winged-helix domain
InterPro	IPR011991	Winged helix-turn-helix transcription repressor DNA-binding
InterPro	IPR007087	Zinc finger, C2H2
InterPro	IPR015880	Zinc finger, C2H2-like
Protein Ontology	PR:000004264	AT-rich interactive domain-containing protein 2

References

(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:192829 Chandler RL, et al., ARID1a-DNA interactions are required for promoter occupancy by SWI/SNF. Mol Cell Biol. 2013 Jan;33(2):265-80
All references(42)

Other accession IDs

MGI:1920892