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Arid2
Gene Detail
 Symbol
Name
ID
Arid2
AT rich interactive domain 2 (ARID, RFX-like)
MGI:1924294
Synonyms 1700124K17Rik, 4432409D24Rik, zipzap/p200
Feature Type protein coding gene
Genetic Map
Chromosome 15
52.37 cM, cytoband F2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:96287518-96404992 bp, + strand
From VEGA annotation of GRCm38

  117475 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14601  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Arid2

Human
homologs
Human Homolog ARID2, AT rich interactive domain 2 (ARID, RFX-like)
NCBI Gene ID 196528
neXtProt AC  NX_Q68CP9
Human Synonyms  BAF200, p200
Human Chr (Location)  12q12; chr12:45729691-45908037 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(57) : Gene trapped(54) Radiation induced(1) Targeted(2)
Genomic Mutations involving Arid2 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Arid2 interacts with 463 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process nucleosome disassembly, positive regulation of transcription from RNA polymerase II promoter
Component nucleus, transcription factor complex
Function transcription factor binding
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (130)    Tissues (130)    Images (3)
Theiler Stages: 2, 3, 4, 5, 17, 21, 22, 23, 28
Assay TypeResults
RNA in situ 122
RT-PCR 8
cDNA source data(202)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(203) cDNA(202) Primer pair(1)
Microarray probesets(8)
Other database
links
VEGA Gene ModelOTTMUSG00000017290 (Evidence)
Ensembl Gene ModelENSMUSG00000033237 (Evidence)
Entrez Gene77044 (Evidence)
UniGene17166
DFCITC1576687, TC1593396, TC1598368, TC1602646, TC1604521, TC1677336
DoTSDT.101239010, DT.101738458, DT.103586656, DT.103586729, DT.40150583
NIA Mouse Gene IndexU016607
Consensus CDS ProjectCCDS37185.2
International Mouse Knockout Project StatusArid2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017290 VEGA Gene Model | MGI Sequence Detail 117475 C57BL/6J ±  kb
transcript OTTMUST00000041922 VEGA | MGI Sequence Detail 8507 Not Applicable 
polypeptide OTTMUSP00000018854 VEGA | MGI Sequence Detail 1828 Not Applicable 

For the selected sequences
All sequences(58) RefSeq(2) UniProt(6)
Polymorphisms SNPs within 2kb(298 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001606 ARID/BRIGHT DNA-binding domain
InterPro IPR016024 Armadillo-type fold
InterPro IPR003150 DNA-binding RFX-type winged-helix domain
InterPro IPR011991 Winged helix-turn-helix DNA-binding domain
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
Protein Ontology PR:000004264 AT-rich interactive domain-containing protein 2
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:192829 Chandler RL, et al., ARID1a-DNA interactions are required for promoter occupancy by SWI/SNF. Mol Cell Biol. 2013 Jan;33(2):265-80
All references(43)
Other
accession IDs
MGI:1920892

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory