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Trappc9
Gene Detail
Symbol

Name
ID
Trappc9
trafficking protein particle complex 9
MGI:1923760
Synonyms
1810044A24Rik, 2900005P22Rik, 4632408O18Rik, Nibp, TRS130
Feature Type
protein coding gene
Genetic Map
Chromosome 15
33.70 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:72589621-73061204 bp, - strand
From Ensembl annotation of GRCm38

  471584 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:81931  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: TRAPPC9
Gene Tree: Trappc9

Human
homologs
TRAPPC9, trafficking protein particle complex 9
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 83696
neXtProt AC: NX_Q96Q05

Human Synonyms: IBP, IKBKBBP, MRT13, NIBP, T1, TRS120

Human Chr (Location): 8q24.3; chr8:139728081-140458579 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human TRAPPC9

Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(12) Radiation induced(1) Targeted(2)
Genomic Mutations involving Trappc9 (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Phenotype Images(2)
Interactions
Trappc9 interacts with 233 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process cell differentiation
Component cytoplasm, endoplasmic reticulum, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (19)    Tissues (16)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 7
RNA in situ 12
cDNA source data(14)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase trappc9    NEW 
Molecular
reagents
All nucleic(15) cDNA(15)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000047921 (Evidence)
Entrez Gene 76510 (Evidence)
DFCI TC1575894, TC1591962, TC1595694, TC1596426, TC1601211, TC1746085
NIA Mouse Gene Index U036267
Consensus CDS Project CCDS37095.1, CCDS37096.1, CCDS49629.1, CCDS49630.1
International Mouse Phenotyping Consortium Status Trappc9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047921 Ensembl Gene Model | MGI Sequence Detail 471584 C57BL/6J ±  kb
transcript ENSMUST00000089770 Ensembl | MGI Sequence Detail 4047 Not Applicable 
polypeptide ENSMUSP00000087202 Ensembl | MGI Sequence Detail 1139 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(12) UniProt(3)
Polymorphisms
SNPs within 2kb(2645 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013935 TRAPP II complex, Trs120
Protein Ontology PR:000016619 trafficking protein particle complex subunit 9
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Other
accession IDs
MGI:1920139, MGI:2443037

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory