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Trappc9 Gene Detail
Summary
  • Symbol
    Trappc9
  • Name
    trafficking protein particle complex 9
  • Synonyms
    1810044A24Rik, 2900005P22Rik, 4632408O18Rik, Nibp, TRS130
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923760
    NCBI Gene: 76510
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:72589620-73061204 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 33.70 cM, cytoband E1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2631 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923760
protein coding gene Chr15:72589620-73061244 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021917
protein coding gene Chr15:72272604-72767953 (-)
A/J MGP_AJ_G0021876
protein coding gene Chr15:69695708-70173353 (-)
AKR/J MGP_AKRJ_G0021858
protein coding gene Chr15:71479443-71967333 (-)
BALB/cJ MGP_BALBcJ_G0021883
protein coding gene Chr15:69704912-70190681 (-)
C3H/HeJ MGP_C3HHeJ_G0021656
protein coding gene Chr15:71623651-72121147 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022322
protein coding gene Chr15:75060298-75562900 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019859
protein coding gene Chr15:66151556-66633094 (-)
CAST/EiJ MGP_CASTEiJ_G0021175
protein coding gene Chr15:72376182-72866337 (-)
CBA/J MGP_CBAJ_G0021622
protein coding gene Chr15:77508727-78014820 (-)
DBA/2J MGP_DBA2J_G0021747
protein coding gene Chr15:69316902-69793520 (-)
FVB/NJ MGP_FVBNJ_G0021729
protein coding gene Chr15:68313144-68784862 (-)
LP/J MGP_LPJ_G0021819
protein coding gene Chr15:72315696-72799270 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021752
protein coding gene Chr15:82901161-83407926 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022344
protein coding gene Chr15:71882557-72372106 (-)
PWK/PhJ MGP_PWKPhJ_G0020916
protein coding gene Chr15:69391089-69877667 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020757
protein coding gene Chr15:71749108-72247322 (-)
WSB/EiJ MGP_WSBEiJ_G0021227
protein coding gene Chr15:71848917-72360404 (-)



Homology
more
  • Human Ortholog
    TRAPPC9, trafficking protein particle complex 9
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRAPPC9, trafficking protein particle complex 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    IBP, IKBKBBP, MRT13, NIBP, T1, TRS120
  • Links
    NCBI Gene ID: 83696
    neXtProt AC: NX_Q96Q05
    UniProt: Q96Q05

  • Chr Location
    8q24.3; chr8:139727725-140458579 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human TRAPPC9 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotypes from 1 allele in 1 genetic background
    33 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000047921 Ensembl Gene Model | MGI Sequence Detail 471585 C57BL/6J ±  kb
    transcript ENSMUST00000089770 Ensembl | MGI Sequence Detail 4048 Not Applicable  
    polypeptide ENSMUSP00000087202 Ensembl | MGI Sequence Detail 1139 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 16

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1920139, MGI:2443037
    References
    more
    • Summaries
      All 60
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 7
      Phenotypes 33
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory