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Utp18 Gene Detail
Summary
  • Symbol
    Utp18
  • Name
    UTP18 small subunit processome component
  • Synonyms
    6230425C22Rik, Wdr50
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923402
    NCBI Gene: 217109
  • Gene Overview
    MyGene.info: UTP18
Location & Maps
more
  • Sequence Map
    Chr11:93859243-93885766 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      26524 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 58.84 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    UTP18, UTP18, small subunit processome component
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UTP18, UTP18, small subunit processome component
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CGI-48, WDR50
  • Links
    NCBI Gene ID: 51096
    neXtProt AC: NX_Q9Y5J1

  • Chr Location
    17q21.33; chr17:51260536-51297933 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 41087
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: UTP18
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    13
  • Gene trapped
    10
  • Targeted
    3
  • Genomic Mutations
    3 involving Utp18
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001465 VEGA Gene Model | MGI Sequence Detail 26524 C57BL/6J ±  kb
transcript OTTMUST00000002887 VEGA | MGI Sequence Detail 2613 Not Applicable  
polypeptide OTTMUSP00000001410 VEGA | MGI Sequence Detail 552 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    230 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000017204 U3 small nucleolar RNA-associated protein 18
  • InterPro Domains
    IPR001680 WD40 repeat
    IPR017986 WD40-repeat-containing domain
    IPR015943 WD40/YVTN repeat-like-containing domain
Molecular
Reagents
less
  • All nucleic 51
    cDNA 51

    Microarray probesets 3
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory