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Rnf139
Gene Detail
Symbol

Name
ID
Rnf139
ring finger protein 139
MGI:1923091
Synonyms
4930555P18Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 15
25.09 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr15:58889229-58902390 bp, + strand
From NCBI annotation of GRCm38

  13162 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5222  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Rnf139

Human
homologs
Human Homolog RNF139, ring finger protein 139
NCBI Gene ID 11236
neXtProt AC  NX_Q8WU17
Human Synonyms  HRCA1, RCA1, TRC8
Human Chr (Location)  8q24; chr8:124474767-124488618 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human RNF139
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Radiation induced(1) Targeted(1)
Genomic Mutations involving Rnf139 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rnf139 interacts with 345 markers (Mir1b, Mir7-1, Mir9-1, ...)
Expression
Literature Summary: (2 records)
Data Summary: Results (29)    Tissues (29)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 29
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000037075 (Evidence)
Entrez Gene75841 (Evidence)
DFCITC1576740, TC1681742, TC1642831, TC1623250
NIA Mouse Gene IndexU016270
EC6.3.2.-
Consensus CDS ProjectCCDS27494.1
International Mouse Knockout Project StatusRnf139
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 75841 NCBI Gene Model | MGI Sequence Detail 13162 C57BL/6J ±  kb
transcript NM_175226 RefSeq | MGI Sequence Detail 4348 C57BL/6 
polypeptide Q7TMV1 UniProt | EBI | MGI Sequence Detail 668 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(32 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR025754 TRC8 N-terminal domain
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
Protein Ontology PR:000014085 E3 ubiquitin-protein ligase RNF139
Graphical View of Protein Domain Structure
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory