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Ccdc18 Gene Detail
Summary
  • Symbol
    Ccdc18
  • Name
    coiled-coil domain containing 18
  • Synonyms
    1700021E15Rik, 4932411G06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922974
    NCBI Gene: 73254
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:108132799-108232951 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 52.55 cM, cytoband E5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    428 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922974
protein coding gene Chr5:108132799-108233628 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029851
protein coding gene Chr5:110200909-110319280 (+)
A/J MGP_AJ_G0029815
protein coding gene Chr5:105981341-106088569 (+)
AKR/J MGP_AKRJ_G0029760
protein coding gene Chr5:109395393-109503568 (+)
BALB/cJ MGP_BALBcJ_G0029827
protein coding gene Chr5:107117196-107227612 (+)
C3H/HeJ MGP_C3HHeJ_G0029549
protein coding gene Chr5:109868086-109982506 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030281
protein coding gene Chr5:114708158-114834676 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027515
protein coding gene Chr5:101029458-101127679 (+)
CAST/EiJ MGP_CASTEiJ_G0028963
protein coding gene Chr5:108781933-108895364 (+)
CBA/J MGP_CBAJ_G0029517
protein coding gene Chr5:118584734-118718303 (+)
DBA/2J MGP_DBA2J_G0029663
protein coding gene Chr5:106109625-106225121 (+)
FVB/NJ MGP_FVBNJ_G0029620
protein coding gene Chr5:104837622-104938371 (+)
LP/J MGP_LPJ_G0029751
protein coding gene Chr5:110797392-110917768 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029652
protein coding gene Chr5:123474309-123606273 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030315
protein coding gene Chr5:108962371-109073068 (+)
PWK/PhJ MGP_PWKPhJ_G0028676
protein coding gene Chr5:104925905-105038423 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028514
protein coding gene Chr5:106483568-106589025 (+)
WSB/EiJ MGP_WSBEiJ_G0029036
protein coding gene Chr5:109268532-109383052 (+)



Homology
more
  • Human Ortholog
    CCDC18, coiled-coil domain containing 18
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC18, coiled-coil domain containing 18
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NY-SAR-41
  • Links
    NCBI Gene ID: 343099
    neXtProt AC: NX_Q5T9S5
    UniProt: Q5T9S5

  • Chr Location
    1p22.1; chr1:93179802-93279037 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 35455
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CCDC18
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73254 NCBI Gene Model | MGI Sequence Detail 100153 C57BL/6J ±  kb
transcript NM_028481 RefSeq | MGI Sequence Detail 4682 C57BL/6  
polypeptide Q640L5 UniProt | EBI | MGI Sequence Detail 1455 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000005108 coiled-coil alpha-helical rod protein 1
  • InterPro Domains
    IPR029613 Coiled-coil domain-containing protein 18/Cytoskeletal protein Sojo
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 4
Other
Accession IDs
less
MGI:1920504
References
more
  • Summaries
    All 31
    Phenotypes 12
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory