Capsl Gene Detail

Summary

• Symbol
  Capsl
• Name
  calcyphosine-like
• Synonyms
  1700028N11Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1922818
  NCBI Gene: 75568
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:9436028-9466038 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 4.09 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922818	protein coding gene	Chr15:9436015-9466039 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021715	protein coding gene	Chr15:6530533-6559575 (+)
A/J	MGP_AJ_G0021675	protein coding gene	Chr15:6354636-6381450 (+)
AKR/J	MGP_AKRJ_G0021653	protein coding gene	Chr15:6519963-6543708 (+)
BALB/cJ	MGP_BALBcJ_G0021682	protein coding gene	Chr15:6264611-6293134 (+)
C3H/HeJ	MGP_C3HHeJ_G0021458	protein coding gene	Chr15:6454105-6477776 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022121	protein coding gene	Chr15:6771303-6797060 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019658	protein coding gene	Chr15:5874251-5898997 (+)
CAST/EiJ	MGP_CASTEiJ_G0020974	protein coding gene	Chr15:6519123-6543965 (+)
CBA/J	MGP_CBAJ_G0021427	protein coding gene	Chr15:6924785-6951124 (+)
DBA/2J	MGP_DBA2J_G0021551	protein coding gene	Chr15:6241948-6265992 (+)
FVB/NJ	MGP_FVBNJ_G0021529	protein coding gene	Chr15:6133735-6157734 (+)
LP/J	MGP_LPJ_G0021619	protein coding gene	Chr15:6451843-6476352 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021554	protein coding gene	Chr15:7144412-7168449 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022144	protein coding gene	Chr15:6489505-6515169 (+)
PWK/PhJ	MGP_PWKPhJ_G0020717	protein coding gene	Chr15:6371608-6395589 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0020555	protein coding gene	Chr15:6440559-6464729 (+)
WSB/EiJ	MGP_WSBEiJ_G0021030	protein coding gene	Chr15:6500006-6523511 (+)

Homology

• Human Ortholog
  CAPSL, calcyphosine like

• Vertebrate Orthologs
  9

• Human Ortholog
  CAPSL, calcyphosine like
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:28375

  NCBI Gene ID: 133690

  neXtProt AC: NX_Q8WWF8

  UniProt: Q8WWF8

  
  
• Chr Location
  5p13.2; chr5:35904295-35938779 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 16959
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: CAPSL
• Gene Tree
  Capsl
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (ENU)
  2
• Gene trapped
  7
• Targeted
  3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  2

• External Resources
  FuncBase

Expression

• Assay Results
  71
• Tissues
  14
• cDNA Data
  9
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  GEISHA CAPS
  Xenbase capsl
  ZFIN capslb

Interactions

• Capsl interacts with 33 markers (Mir18, Mir130a, Mir134, ...) View All

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  6
• UniProt
  2
• CCDS
  CCDS37040.1
• UniGene
  82143

• Ensembl
  ENSMUSG00000039676 (Evidence)
• NCBI Gene
  75568

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000039676	Ensembl Gene Model | MGI Sequence Detail	30011	C57BL/6J
transcript	ENSMUST00000042360	Ensembl | MGI Sequence Detail	949	Not Applicable
polypeptide	ENSMUSP00000035663	Ensembl | MGI Sequence Detail	208	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000005028 calcyphosin-like protein
  (term hierarchy)
• InterPro Domains
  IPR029633 Calcyphosin-like protein
  IPR018247 EF-Hand 1, calcium-binding site
  IPR002048 EF-hand domain
  IPR011992 EF-hand domain pair

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2146200

References

• Summaries
  All 30

  Developmental Gene Expression 3

  Gene Ontology 2

  Phenotypes 6
• Earliest
  J:28008 Harrison SM, et al., Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Development. 1995 Aug;121(8):2479-89
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Capsl:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130637	Chr15:9436039-9436083 (+)	33 bp
Tssr130638	Chr15:9436085-9436103 (+)	66 bp
Tssr130639	Chr15:9436108-9436125 (+)	89 bp