Stpg3 MGI Mouse Gene Detail - MGI:1921722 - sperm tail PG rich repeat containing 3

Symbol

Stpg3
Name

sperm tail PG rich repeat containing 3
Synonyms

4933433C11Rik

Feature Type

protein coding gene
IDs

MGI:1921722
NCBI Gene: 74472
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr2:25102219-25104649 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 17.07 cM, cytoband A3
Mapping Data

2 experiments

SNPs within 2kb

6 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921722	protein coding gene	Chr2:25102219-25108680 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0025424	protein coding gene	Chr2:23075501-23077931 (-)
A/J	MGP_AJ_G0025401	protein coding gene	Chr2:22177053-22179483 (-)
AKR/J	MGP_AKRJ_G0025371	protein coding gene	Chr2:22931594-22934024 (-)
BALB/cJ	MGP_BALBcJ_G0025397	protein coding gene	Chr2:22299793-22302223 (-)
C3H/HeJ	MGP_C3HHeJ_G0025158	protein coding gene	Chr2:22860759-22863189 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0025841	protein coding gene	Chr2:23809318-23811748 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023252	protein coding gene	Chr2:21109399-21111856 (-)
CAST/EiJ	MGP_CASTEiJ_G0024621	protein coding gene	Chr2:22744431-22746874 (-)
CBA/J	MGP_CBAJ_G0025136	protein coding gene	Chr2:24645246-24647676 (-)
DBA/2J	MGP_DBA2J_G0025269	protein coding gene	Chr2:22033388-22035818 (-)
FVB/NJ	MGP_FVBNJ_G0025231	protein coding gene	Chr2:21772996-21775426 (-)
LP/J	MGP_LPJ_G0025355	protein coding gene	Chr2:23022386-23024816 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025262	protein coding gene	Chr2:24850144-24852574 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025900	protein coding gene	Chr2:22877837-22880267 (-)
PWK/PhJ	MGP_PWKPhJ_G0024369	protein coding gene	Chr2:21844531-21846975 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0024169	protein coding gene	Chr2:23033566-23036020 (-)
WSB/EiJ	MGP_WSBEiJ_G0024690	protein coding gene	Chr2:22950332-22952762 (-)

Human Ortholog

STPG3, sperm-tail PG-rich repeat containing 3

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

STPG3, sperm-tail PG-rich repeat containing 3
Synonyms

C9orf173
Links

HGNC:37285

NCBI Gene ID: 441476

neXtProt AC: NX_Q8N7X2

UniProt: Q8N7X2
Chr Location

9q34.3; chr9:137251261-137253483 (+) GRCh38

MGI Vertebrate Homology

Stpg3 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: STPG3
Gene Tree

Stpg3

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
6 phenotype references

All Mutations and Alleles

4
Endonuclease-mediated

2
Gene trapped

1
Targeted

1
Incidental Mutations

APF
Find Mice (IMSR)

16 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Male mice exhibit normal fertility.

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

9

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

40
RefSeq

6
UniProt

2
CCDS

CCDS50525.1

Ensembl

ENSMUSG00000036770 (Evidence)
NCBI Gene

74472

			Length	Strain/Species	Flank
genomic	ENSMUSG00000036770	Ensembl Gene Model \| MGI Sequence Detail	2431	C57BL/6J	± kb
transcript	ENSMUST00000043774	Ensembl \| MGI Sequence Detail	1430	Not Applicable
polypeptide	ENSMUSP00000037603	Ensembl \| MGI Sequence Detail	306	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000059940 protein STPG3

(term hierarchy)
InterPro Domains

IPR010736 Sperm-tail PG-rich repeat

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All nucleic 9

cDNA 9

Microarray probesets 1

Summaries

All 23

Gene Ontology 1

Phenotypes 6
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:296968 Park S, et al., CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Biol Reprod. 2020 Aug 4;103(2):195-204

TSS for Stpg3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22947	Chr2:25104640-25104645 (-)	6 bp
Tssr22946	Chr2:25104628-25104635 (-)	17 bp
Tssr22945	Chr2:25104593-25104620 (-)	42 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23