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Rnf6
Gene Detail
 Symbol
Name
ID
Rnf6
ring finger protein (C3H2C3 type) 6
MGI:1921382
Synonyms 1200013I08Rik, 5730419H05Rik
Feature Type protein coding gene
Genetic Map
Chromosome 5
85.18 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:146209192-146221555 bp, - strand
From VEGA annotation of GRCm38

  12364 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14036  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Rnf6

Human
homologs
Human Homolog RNF6, ring finger protein (C3H2C3 type) 6
NCBI Gene ID 6049
neXtProt AC  NX_Q9Y252
Human Chr (Location)  13q12.2; chr13:26132115-26222549 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human RNF6
Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(6) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rnf6 interacts with 220 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (37 annotations)
Process negative regulation of axon extension, positive regulation of transcription, DNA-templated, ...
Component axon, cell projection, ...
Function androgen receptor binding, coenzyme F420-0 gamma-glutamyl ligase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (38)    Tissues (17)    Images (5)
Theiler Stages: 17, 18, 23
Assay TypeResults
RNA in situ 38
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000031090 (Evidence)
Ensembl Gene ModelENSMUSG00000029634 (Evidence)
Entrez Gene74132 (Evidence)
DFCITC1572861, TC1613387, TC1638174
DoTSDT.103563604, DT.492496, DT.55158833, DT.99860538
NIA Mouse Gene IndexU026954
EC6.3.2.-
Consensus CDS ProjectCCDS19868.1
International Mouse Knockout Project StatusRnf6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031090 VEGA Gene Model | MGI Sequence Detail 12364 C57BL/6J ±  kb
transcript OTTMUST00000077021 VEGA | MGI Sequence Detail 3452 Not Applicable 
polypeptide OTTMUSP00000040618 VEGA | MGI Sequence Detail 667 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(8) UniProt(5)
Polymorphisms SNPs within 2kb(60 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
Protein Ontology PR:000014140 E3 ubiquitin-protein ligase RNF6
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(39)
Other
accession IDs
MGI:1917790, MGI:2140772

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory