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Rnf6 Gene Detail
Summary
  • Symbol
    Rnf6
  • Name
    ring finger protein (C3H2C3 type) 6
  • Synonyms
    1200013I08Rik, 5730419H05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921382
    NCBI Gene: 74132
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:146209193-146221457 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 85.18 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    58 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921382
protein coding gene Chr5:146209192-146221555 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030374
protein coding gene Chr5:151771564-151784878 (-)
A/J MGP_AJ_G0030347
protein coding gene Chr5:145357904-145370944 (-)
AKR/J MGP_AKRJ_G0030274
protein coding gene Chr5:149783050-149795437 (-)
BALB/cJ MGP_BALBcJ_G0030356
protein coding gene Chr5:146566844-146579577 (-)
C3H/HeJ MGP_C3HHeJ_G0030070
protein coding gene Chr5:150734343-150747760 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030811
protein coding gene Chr5:157347976-157360332 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028024
protein coding gene Chr5:139774342-139786912 (-)
CAST/EiJ MGP_CASTEiJ_G0029472
protein coding gene Chr5:150239865-150254027 (-)
CBA/J MGP_CBAJ_G0030048
protein coding gene Chr5:163874494-163886776 (-)
DBA/2J MGP_DBA2J_G0030192
protein coding gene Chr5:145014430-145028705 (-)
FVB/NJ MGP_FVBNJ_G0030146
protein coding gene Chr5:144232384-144244601 (-)
LP/J MGP_LPJ_G0030279
protein coding gene Chr5:152452719-152464787 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030182
protein coding gene Chr5:166239562-166251948 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030841
protein coding gene Chr5:149700890-149713799 (-)
PWK/PhJ MGP_PWKPhJ_G0029186
protein coding gene Chr5:144105963-144118865 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029022
protein coding gene Chr5:146950878-146964179 (-)
WSB/EiJ MGP_WSBEiJ_G0029549
protein coding gene Chr5:150505421-150518763 (-)



Homology
more
  • Human Ortholog
    RNF6, ring finger protein 6
  • Vertebrate Orthologs
    8
  • Human Ortholog
    RNF6, ring finger protein 6
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 6049
    neXtProt AC: NX_Q9Y252
    UniProt: Q9Y252

  • Chr Location
    13q12.13; chr13:26132115-26222559 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human RNF6 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74132 NCBI Gene Model | MGI Sequence Detail 12265 C57BL/6J ±  kb
transcript NM_028774 RefSeq | MGI Sequence Detail 3360 Not Specified  
polypeptide Q9DBU5 UniProt | EBI | MGI Sequence Detail 667 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 4
Other
Accession IDs
less
MGI:1917790, MGI:2140772
References
more
  • Summaries
    All 35
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:208600 Hunter CS, et al., Islet alpha-, beta-, and delta-cell development is controlled by the Ldb1 coregulator, acting primarily with the islet-1 transcription factor. Diabetes. 2013 Mar;62(3):875-86

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory