4833417C18Rik Gene Detail

Summary

• Symbol
  4833417C18Rik
• Name
  RIKEN cDNA 4833417C18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921156
  NCBI Gene: 73906
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:95749664-95751870 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921156	lncRNA gene	Chr11:95749643-95751872 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015196	unclassified non-coding RNA gene	Chr11:98101087-98103265 (+)
A/J	MGP_AJ_G0015170	unclassified non-coding RNA gene	Chr11:94128595-94130766 (+)
AKR/J	MGP_AKRJ_G0015133	unclassified non-coding RNA gene	Chr11:97031517-97033688 (+)
BALB/cJ	MGP_BALBcJ_G0015132	unclassified non-coding RNA gene	Chr11:94609703-94611876 (+)
C3H/HeJ	MGP_C3HHeJ_G0014956	unclassified non-coding RNA gene	Chr11:97163781-97165952 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015589	unclassified non-coding RNA gene	Chr11:101167825-101170292 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013332	unclassified non-coding RNA gene	Chr11:91603774-91605957 (+)
CAST/EiJ	MGP_CASTEiJ_G0014509	unclassified non-coding RNA gene	Chr11:97980334-97982508 (+)
CBA/J	MGP_CBAJ_G0014935	unclassified non-coding RNA gene	Chr11:105311508-105313679 (+)
DBA/2J	MGP_DBA2J_G0015028	unclassified non-coding RNA gene	Chr11:93703616-93705795 (+)
FVB/NJ	MGP_FVBNJ_G0015040	unclassified non-coding RNA gene	Chr11:93176823-93178997 (+)
LP/J	MGP_LPJ_G0015109	unclassified non-coding RNA gene	Chr11:98667595-98669773 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015066	unclassified non-coding RNA gene	Chr11:105325470-105327643 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015628	unclassified non-coding RNA gene	Chr11:97321998-97324166 (+)
PWK/PhJ	MGP_PWKPhJ_G0014301	unclassified non-coding RNA gene	Chr11:94643476-94645746 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014088	unclassified non-coding RNA gene	Chr11:97017454-97019658 (+)
WSB/EiJ	MGP_WSBEiJ_G0014612	unclassified non-coding RNA gene	Chr11:97232424-97234598 (+)

Homology

• Gene Tree
  4833417C18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  9
• Gene trapped
  7
• Targeted
  2
• Genomic Mutations
  2 involving 4833417C18Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000086015 (Evidence)
• NCBI Gene
  73906

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086015	Ensembl Gene Model | MGI Sequence Detail	2207	C57BL/6J
transcript	ENSMUST00000146868	Ensembl | MGI Sequence Detail	1296	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 10
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 4833417C18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104415	Chr11:95749680-95749706 (+)	29 bp
Tssr104416	Chr11:95749707-95749727 (+)	53 bp
Tssr104417	Chr11:95749731-95749758 (+)	81 bp