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Shisa9 Gene Detail
Summary
  • Symbol
    Shisa9
  • Name
    shisa family member 9
  • Synonyms
    2700045P11Rik, CKAMP44
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919805
    NCBI Gene: 72555
Location & Maps
more
  • Sequence Map
    Chr16:11984113-12270902 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      286790 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 6.89 cM, cytoband B1
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SHISA9, shisa family member 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SHISA9, shisa family member 9
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CKAMP44
  • Links
    NCBI Gene ID: 729993
    neXtProt AC: NX_B4DS77

  • Chr Location
    16p13.12; chr16:12901620-13562919 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044348 VEGA Gene Model | MGI Sequence Detail 286790 C57BL/6J ±  kb
transcript OTTMUST00000116725 VEGA | MGI Sequence Detail 3421 Not Applicable  
polypeptide OTTMUSP00000065108 VEGA | MGI Sequence Detail 424 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1741 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 10
    Primer pair 1
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:212850 Karataeva AR, et al., C-terminal interactors of the AMPA receptor auxiliary subunit Shisa9. PLoS One. 2014;9(2):e87360

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory