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Lrpprc Gene Detail
Summary
  • Symbol
    Lrpprc
  • Name
    leucine-rich PPR-motif containing
  • Synonyms
    3110001K13Rik, Lrp130
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919666
    NCBI Gene: 72416
  • Gene Overview
    MyGene.info: LRPPRC
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr17:84705247-84790789 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      85543 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 55.02 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    LRPPRC, leucine rich pentatricopeptide repeat containing
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LRPPRC, leucine rich pentatricopeptide repeat containing
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CLONE-23970, GP130, LRP130, LSFC
  • Links
    NCBI Gene ID: 10128
    neXtProt AC: NX_P42704
    UniProt: P42704

  • Chr Location
    2p21; chr2:43886224-43996005 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 32695
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LRPPRC
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human LRPPRC associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotypes from 4 alleles in 4 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trap allele exhibit embryonic lethality during organogenesis associated with growth retardation. Mice homozygous for a knock-out allele exhibit embryonic lethality between somite formation and embryo turning.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
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    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic OTTMUSG00000030887 VEGA Gene Model | MGI Sequence Detail 85543 C57BL/6J ±  kb
    transcript OTTMUST00000076447 VEGA | MGI Sequence Detail 4393 Not Applicable  
    polypeptide OTTMUSP00000040245 VEGA | MGI Sequence Detail 1392 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      448 from dbSNP Build 142
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • Protein Ontology
      PR:000009930 leucine-rich PPR motif-containing protein, mitochondrial
    • InterPro Domains
      IPR033490 Leucine-rich PPR motif-containing protein
      IPR002885 Pentatricopeptide repeat
      IPR011990 Tetratricopeptide-like helical domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 136
      cDNA 135
      Primer pair 1

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:2145077
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 3
      Gene Ontology 9
      Phenotypes 11
    • Earliest
      J:31388 Suzuki Y, et al., Identification of differentially expressed mRNAs during neuronal differentiation of P19 embryonal carcinoma cells. Neurosci Res. 1995 Aug;23(1):65-71
    • Latest
      J:254973 Kuhl I, et al., Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals. Elife. 2017 Nov 14;6

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    06/12/2018
    MGI 6.12
    The Jackson Laboratory