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Lsm11
Gene Detail
Symbol

Name
ID
Lsm11
U7 snRNP-specific Sm-like protein LSM11
MGI:1919540
Synonyms
2210404M20Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
27.46 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:45928269-45944935 bp, - strand
From VEGA annotation of GRCm38

  16667 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32693  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 chicken; 1 western clawed frog

Gene Tree: Lsm11

Human
homologs
Human Homolog LSM11, LSM11, U7 small nuclear RNA associated
NCBI Gene ID 134353
neXtProt AC  NX_P83369
Human Chr (Location)  5q33.3; chr5:157743747-157756738 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from APF )
Interactions
Lsm11 interacts with 375 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process histone mRNA 3'-end processing, mRNA processing, ...
Component histone pre-mRNA 3'end processing complex, nucleus, ...
Function protein binding, RNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (49)    Tissues (5)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 49
cDNA source data(52)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(52) cDNA(52)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000005480 (Evidence)
Ensembl Gene ModelENSMUSG00000044847 (Evidence)
Entrez Gene72290 (Evidence)
UniGene249827
DFCITC1583650, TC1601145, TC1617628
DoTSDT.486106, DT.97386988
NIA Mouse Gene IndexU032692
Consensus CDS ProjectCCDS36131.1
International Mouse Knockout Project StatusLsm11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005480 VEGA Gene Model | MGI Sequence Detail 16667 C57BL/6J ±  kb
transcript OTTMUST00000012202 VEGA | MGI Sequence Detail 6453 Not Applicable 
polypeptide OTTMUSP00000005628 VEGA | MGI Sequence Detail 361 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(261 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010920 Like-Sm (LSM) domain
InterPro IPR001163 Ribonucleoprotein LSM domain
InterPro IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type
Protein Ontology PR:000009956 U7 snRNA-associated Sm-like protein LSm11
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:2144458

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory