1600014C10Rik Gene Detail

Summary

• Symbol
  1600014C10Rik
• Name
  RIKEN cDNA 1600014C10 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1919494
  NCBI Gene: 72244

Location & Maps

• Sequence Map
  Chr7:38183217-38197568 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    14352 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 25.36 cM, cytoband B1
• Mapping Data
  3 experiments

Homology

• Human Ortholog
  C19orf12, chromosome 19 open reading frame 12

• Vertebrate Orthologs
  14

• Human Ortholog
  C19orf12, chromosome 19 open reading frame 12
  Orthology source: HomoloGene, HGNC
• Synonyms
  MPAN, NBIA3, NBIA4, SPG43
• Links
  HGNC:25443

  NCBI Gene ID: 83636

  neXtProt AC: NX_Q9NSK7

  UniProt: Q9NSK7

  
  
• Chr Location
  19q12; chr19:29698886-29715789 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 41744
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;3 chicken;3 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: C19orf12
• Gene Tree
  1600014C10Rik
  

Human Diseases

• Diseases
  2 with human C19orf12 associations

				Human Disease	Mouse Models
				hereditary spastic paraplegia 43 IDs hereditary spastic paraplegia 43       DOID:0110795 ICD10CM:G11.4 OMIM:615043 ORDO:320370
				neurodegeneration with brain iron accumulation 4 IDs neurodegeneration with brain iron accumulation 4       DOID:0110738 ICD10CM:G23.0 OMIM:614298 ORDO:289560

Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  4
• Targeted
  1
• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  11
• GO References
  2

• External Resources
  FuncBase

Expression

• cDNA Data
  106
• Literature Summary
  1

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  ZFIN zgc:101715, zgc:112052

Interactions

• 1600014C10Rik interacts with 263 markers (Mir7-1, Mir7-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  4
• UniProt
  3
• UniGene
  187554

• VEGA
  OTTMUSG00000042336 (Evidence)
• Ensembl
  ENSMUSG00000054676 (Evidence)
• NCBI Gene
  72244

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000042336	VEGA Gene Model | MGI Sequence Detail	14352	C57BL/6J
transcript	OTTMUST00000111533	VEGA | MGI Sequence Detail	3341	Not Applicable
polypeptide	OTTMUSP00000074500	VEGA | MGI Sequence Detail	83	Not Applicable

Polymorphisms

• SNPs within 2kb
  387 from dbSNP Build 142

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR033369 Protein C19orf12 homologue

Molecular
Reagents

• All nucleic 106

  cDNA 106

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:2141949

References

• Summaries
  All 27

  Developmental Gene Expression 1

  Gene Ontology 2

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582