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Snx6 Gene Detail
Summary
  • Symbol
    Snx6
  • Name
    sorting nexin 6
  • Synonyms
    2010006G21Rik, 2610032J07Rik, 2810425K19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919433
    NCBI Gene: 72183
Location & Maps
more
  • Sequence Map
    Chr12:54746349-54795703 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      49355 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 23.46 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SNX6, sorting nexin 6
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SNX6, sorting nexin 6
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MSTP010, TFAF2
  • Links
    NCBI Gene ID: 58533
    neXtProt AC: NX_Q9UNH7

  • Chr Location
    14q13.1; chr14:34561409-34630160 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    71
  • Chemically induced (other)
    1
  • Gene trapped
    68
  • Targeted
    2
  • Genomic Mutations
    1 involving Snx6
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000005656 Ensembl Gene Model | MGI Sequence Detail 49355 C57BL/6J ±  kb
transcript ENSMUST00000005798 Ensembl | MGI Sequence Detail 1928 Not Applicable  
polypeptide ENSMUSP00000005798 Ensembl | MGI Sequence Detail 406 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    323 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 7
Other
Accession IDs
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MGI:1916480, MGI:1917093, MGI:2144946, MGI:2145122
References
more
  • Summaries
    All 29
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:225663 Gonzalez-Granado JM, et al., Sorting nexin 6 enhances lamin a synthesis and incorporation into the nuclear envelope. PLoS One. 2014;9(12):e115571

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/15/2016
MGI 6.04
The Jackson Laboratory