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Tmem79
Gene Detail
Symbol

Name
ID
Tmem79
transmembrane protein 79
MGI:1919163
Synonyms
2310042N02Rik, 2310074C17Rik, ma, Matt, mattrin
Feature Type
protein coding gene
Genetic Map
Chromosome 3
38.80 cM, cytoband F1
Detailed Genetic Map ± 1 cM


Mapping data(41)
Sequence Map
Chr3:88328655-88334504 bp, - strand
From VEGA annotation of GRCm38

  5850 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11492  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Tmem79

Human
homologs
Human Homolog TMEM79, transmembrane protein 79
NCBI Gene ID 84283
neXtProt AC  NX_Q9BSE2
Human Synonyms  MATT
Human Chr (Location)  1q22; chr1:156282913-156292443 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(11) Spontaneous(2) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a spontaneous mutation exhibit abnormal coat/hair pigmentation, abnormal zigzag hair morphology, and a more sparse and shiny coat than wild-type controls. Some adults display a mild irritation around the eyes.
 
Human Diseases Modeled Using Mouse Tmem79 (1)    Alleles Annotated to Human Diseases(1)   
Interactions
Tmem79 interacts with 155 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process cornification, cuticle development, ...
Component cell, cytoplasm, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (27)    Tissues (2)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 27
cDNA source data(5)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000022067 (Evidence)
Ensembl Gene ModelENSMUSG00000001420 (Evidence)
Entrez Gene71913 (Evidence)
DFCITC1580386
NIA Mouse Gene IndexU024249
Consensus CDS ProjectCCDS17470.1
International Mouse Knockout Project StatusTmem79
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022067 VEGA Gene Model | MGI Sequence Detail 5850 C57BL/6J ±  kb
transcript OTTMUST00000052391 VEGA | MGI Sequence Detail 2406 Not Applicable 
polypeptide OTTMUSP00000024839 VEGA | MGI Sequence Detail 391 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(13 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000029816 transmembrane protein 79
References
(Earliest) J:24772 Searle AG, et al., Matted (symbol ma). Mouse News Lett. 1954;11:29
(Latest) J:202453 Saunders SP, et al., Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects. J Allergy Clin Immunol. 2013 Nov;132(5):1121-9
All references(47)
Disease annotation references (2)
Other
accession IDs
MGD-MRK-12093, MGI:1919175, MGI:96906

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory