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Phf11a
Gene Detail
Symbol

Name
ID
Phf11a
PHD finger protein 11A
MGI:1918441
Synonyms
4933417L10Rik, Phf11
Feature Type
protein coding gene
Genetic Map
Chromosome 14
31.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr14:59276913-59297522 bp, - strand
From VEGA annotation of GRCm38

  20610 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:87807  Vertebrate Homology Class
1 human; 4 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken

HCOP human homology predictions: PHF11
Gene Tree: Phf11a

Human
homologs
PHF11, PHD finger protein 11
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 51131
neXtProt AC: NX_Q9UIL8

Human Synonyms: APY, BCAP, IGEL, IGER, IGHER, NYREN34, NY-REN-34

Human Chr (Location): 13q14.2; chr13:49495610-49528987 (+)  GRCh38.p2

Disease Associations: (2) Diseases Associated with Human PHF11

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from APF )
Interactions
Phf11a interacts with 92 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process regulation of immune response
Component nucleus
Function metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(9)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(9) cDNA(9)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000021013 (Evidence)
Ensembl Gene Model ENSMUSG00000044703 (Evidence)
Entrez Gene 219131 (Evidence)
UniGene 254918
DFCI TC1590774
DoTS DT.101330877, DT.55242818
NIA Mouse Gene Index U035636, U152878
Consensus CDS Project CCDS27169.1
International Mouse Phenotyping Consortium Status Phf11a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021013 VEGA Gene Model | MGI Sequence Detail 20610 C57BL/6J ±  kb
transcript OTTMUST00000049673 VEGA | MGI Sequence Detail 1354 Not Applicable 
polypeptide OTTMUSP00000023054 VEGA | MGI Sequence Detail 293 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(71 from dbSNP Build 137)    SNPs within 2kb including multiple locations(87)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000034106 PHD finger protein 11A
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:217094 Zhang Y, et al., Functional analysis of a novel ENU-induced PHD finger 11 (Phf11) mouse mutant. Mamm Genome. 2014 Dec;25(11-12):573-82
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory