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Vcpip1 Gene Detail
Summary
  • Symbol
    Vcpip1
  • Name
    valosin containing protein (p97)/p47 complex interacting protein 1
  • Synonyms
    5730421J18Rik, 5730538E15Rik, mKIAA1850, Vcip135
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917925
    NCBI Gene: 70675
  • Gene Overview
    MyGene.info: VCPIP1
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:9718622-9748382 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 2.08 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    128 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917925
protein coding gene Chr1:9718622-9748382 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015827
protein coding gene Chr1:6955091-6988059 (-)
A/J MGP_AJ_G0015809
protein coding gene Chr1:7027862-7061193 (-)
AKR/J MGP_AKRJ_G0015768
protein coding gene Chr1:6911535-6944011 (-)
BALB/cJ MGP_BALBcJ_G0015765
protein coding gene Chr1:6765611-6794946 (-)
C3H/HeJ MGP_C3HHeJ_G0015599
protein coding gene Chr1:6829841-6858829 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016219
protein coding gene Chr1:7302428-7331301 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013940
protein coding gene Chr1:5870833-5897538 (-)
CAST/EiJ MGP_CASTEiJ_G0015179
protein coding gene Chr1:7019869-7050270 (-)
CBA/J MGP_CBAJ_G0015572
protein coding gene Chr1:7441658-7470532 (-)
DBA/2J MGP_DBA2J_G0015671
protein coding gene Chr1:6653082-6683050 (-)
FVB/NJ MGP_FVBNJ_G0015676
protein coding gene Chr1:6568785-6597984 (-)
LP/J MGP_LPJ_G0015743
protein coding gene Chr1:7175926-7208267 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015695
protein coding gene Chr1:8099134-8135367 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016265
protein coding gene Chr1:6813822-6845278 (-)
PWK/PhJ MGP_PWKPhJ_G0014963
protein coding gene Chr1:6511114-6541680 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014743
protein coding gene Chr1:6977651-7005097 (-)
WSB/EiJ MGP_WSBEiJ_G0015243
protein coding gene Chr1:6843237-6873963 (-)



Homology
more
  • Human Ortholog
    VCPIP1, valosin containing protein interacting protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VCPIP1, valosin containing protein interacting protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DUBA3, VCIP135
  • Links
    NCBI Gene ID: 80124
    neXtProt AC: NX_Q96JH7
    UniProt: Q96JH7

  • Chr Location
    8q13.1; chr8:66630253-66667217 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11814
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: VCPIP1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70675 NCBI Gene Model | MGI Sequence Detail 29761 C57BL/6J ±  kb
transcript NM_173443 RefSeq | MGI Sequence Detail 9749 C57BL/6  
polypeptide Q8CDG3 UniProt | EBI | MGI Sequence Detail 1220 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 7
Other
Accession IDs
less
MGI:1917792
References
more
  • Summaries
    All 31
    Gene Ontology 7
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory