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Smim3 Gene Detail
Summary
  • Symbol
    Smim3
  • Name
    small integral membrane protein 3
  • Synonyms
    2010002N04Rik, cI-41, Nid67
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917088
    NCBI Gene: 106878
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:60474191-60501987 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 34.36 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    281 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917088
protein coding gene Chr18:60474191-60518949 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024461
protein coding gene Chr18:60285198-60314633 (-)
A/J MGP_AJ_G0024428
protein coding gene Chr18:57705877-57733731 (-)
AKR/J MGP_AKRJ_G0024398
protein coding gene Chr18:59298552-59326100 (-)
BALB/cJ MGP_BALBcJ_G0024427
protein coding gene Chr18:57841357-57869394 (-)
C3H/HeJ MGP_C3HHeJ_G0024195
protein coding gene Chr18:59528694-59559193 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024874
protein coding gene Chr18:61942917-61973261 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022305
protein coding gene Chr18:57261749-57290139 (-)
CAST/EiJ MGP_CASTEiJ_G0023668
protein coding gene Chr18:59392037-59420060 (-)
CBA/J MGP_CBAJ_G0024165
protein coding gene Chr18:63959468-63987004 (-)
DBA/2J MGP_DBA2J_G0024295
protein coding gene Chr18:57387630-57416140 (-)
FVB/NJ MGP_FVBNJ_G0024261
protein coding gene Chr18:56784942-56812759 (-)
LP/J MGP_LPJ_G0024378
protein coding gene Chr18:60153032-60180988 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024290
protein coding gene Chr18:65594990-65623678 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024921
protein coding gene Chr18:59483162-59514227 (-)
PWK/PhJ MGP_PWKPhJ_G0023411
protein coding gene Chr18:57608800-57636564 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023217
protein coding gene Chr18:59722411-59751743 (-)
WSB/EiJ MGP_WSBEiJ_G0023732
protein coding gene Chr18:59348378-59377801 (-)



Homology
more
  • Human Ortholog
    SMIM3, small integral membrane protein 3
  • Vertebrate Orthologs
    6
  • Human Ortholog
    SMIM3, small integral membrane protein 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C5orf62, MST150, NID67
  • Links
    NCBI Gene ID: 85027
    neXtProt AC: NX_Q9BZL3
    UniProt: Q9BZL3

  • Chr Location
    5q33.1; chr5:150777946-150796736 (+)  GRCh38.p7

Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotypes from multigenic genotypes
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038059 Ensembl Gene Model | MGI Sequence Detail 27797 C57BL/6J ±  kb
transcript ENSMUST00000042710 Ensembl | MGI Sequence Detail 1990 Not Applicable  
polypeptide ENSMUSP00000039285 Ensembl | MGI Sequence Detail 60 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR035275 Small integral membrane protein 3
Molecular
Reagents
less
  • All nucleic 28
    cDNA 28

    Microarray probesets 4
Other
Accession IDs
less
MGI:1930796, MGI:2147200
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:66308 Takahashi Y, et al., Identification of cAMP analogue inducible genes in RAW264 macrophages. Biochim Biophys Acta. 2000 Jul 24;1492(2-3):385-94
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/09/2019
MGI 6.14
The Jackson Laboratory