2410003L11Rik Gene Detail

Summary

• Symbol
  2410003L11Rik
• Name
  RIKEN cDNA 2410003L11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916979
  NCBI Gene: 69729
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:97489337-97513719 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  746 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916979	lncRNA gene	Chr11:97475162-97514733 (+)
129S1/SvImJ	ENSMUSG00200053118	lncRNA gene	Chr11:94736239-94761664 (+)
A/J	ENSMUSG00195052840	lncRNA gene	Chr11:94459442-94485367 (+)
AKR/J	ENSMUSG00220051795	lncRNA gene	Chr11:94718580-94744512 (+)
BALB/cJ	ENSMUSG00180052462	lncRNA gene	Chr11:94724113-94750031 (+)
C3H/HeJ	ENSMUSG00175052295	lncRNA gene	Chr11:94716292-94741715 (+)
C57BL/6NJ	ENSMUSG00215054122	lncRNA gene	Chr11:94307147-94332565 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013338	unclassified non-coding RNA gene	Chr11:93377107-93400023 (+)
CAST/EiJ	ENSTCUG00005050651	lncRNA gene	Chr11:94170544-94195970 (+)
CBA/J	ENSMUSG00210053721	lncRNA gene	Chr11:94421540-94447436 (+)
DBA/2J	ENSMUSG00185052187	lncRNA gene	Chr11:94766190-94791620 (+)
FVB/NJ	ENSMUSG00205049454	lncRNA gene	Chr11:94626374-94652299 (+)
JF1/MsJ	ENSUMUG00000055586	lncRNA gene	Chr11:95072340-95097436 (+)
LP/J	ENSMUSG00230050927	lncRNA gene	Chr11:95819168-95844590 (+)
NOD/ShiLtJ	ENSMUSG00190052067	lncRNA gene	Chr11:94808746-94834638 (+)
NZO/HlLtJ	ENSMUSG00225052476	lncRNA gene	Chr11:97872792-97898707 (+)
PWK/PhJ	ENSLUMG00010052637	lncRNA gene	Chr11:94621843-94647382 (+)
SPRET/EiJ	ENSMSPG00010050632	lncRNA gene	Chr11:95116274-95141663 (+)
WSB/EiJ	ENSIUOG00005050907	lncRNA gene	Chr11:94564752-94590838 (+)

Homology

• Gene Tree
  2410003L11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  94
• Gene trapped
  93
• Targeted
  1
• Genomic Mutations
  1 involving 2410003L11Rik
• Find Mice (IMSR)
  39 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  1

• Ensembl
  ENSMUSG00000085860 (Evidence)
• NCBI Gene
  69729

Representative Sequences			Length	Strain/Species
genomic	69729	NCBI Gene Model | MGI Sequence Detail	24383	C57BL/6J
transcript	NR_045496	RefSeq | MGI Sequence Detail	612	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 21

  Phenotypes 11
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for 2410003L11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104637	Chr11:97489329-97489350 (+)	3 bp