About   Help   FAQ
Tnfsf13 Gene Detail
Summary
  • Symbol
    Tnfsf13
  • Name
    tumor necrosis factor (ligand) superfamily, member 13
  • Synonyms
    2310026N09Rik, APRIL, TALL2, TRDL1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916833
    NCBI Gene: 69583
  • Gene Overview
    MyGene.info: TNFSF13
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:69682846-69685784 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 42.86 cM, cytoband B4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    35 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916833
protein coding gene Chr11:69682577-69685784 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018549
protein coding gene Chr11:70141858-70144796 (-)
A/J MGP_AJ_G0018517
protein coding gene Chr11:67499795-67502733 (-)
AKR/J MGP_AKRJ_G0018486
protein coding gene Chr11:69509539-69512477 (-)
BALB/cJ MGP_BALBcJ_G0018489
protein coding gene Chr11:67809221-67812159 (-)
C3H/HeJ MGP_C3HHeJ_G0018302
protein coding gene Chr11:69541324-69544262 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018940
protein coding gene Chr11:72262912-72265850 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016585
protein coding gene Chr11:64418614-64421572 (-)
CAST/EiJ MGP_CASTEiJ_G0017857
protein coding gene Chr11:69782625-69785563 (-)
CBA/J MGP_CBAJ_G0018275
protein coding gene Chr11:75499270-75502208 (-)
DBA/2J MGP_DBA2J_G0018384
protein coding gene Chr11:67082262-67085199 (-)
FVB/NJ MGP_FVBNJ_G0018374
protein coding gene Chr11:66725568-66728506 (-)
LP/J MGP_LPJ_G0018454
protein coding gene Chr11:70710421-70713359 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018397
protein coding gene Chr11:76089814-76092752 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018982
protein coding gene Chr11:69771165-69774103 (-)
PWK/PhJ MGP_PWKPhJ_G0017631
protein coding gene Chr11:67732142-67735079 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017421
protein coding gene Chr11:69591106-69594046 (-)
WSB/EiJ MGP_WSBEiJ_G0017911
protein coding gene Chr11:69443466-69446404 (-)



Homology
more
  • Human Ortholog
    TNFSF13, TNF superfamily member 13
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TNFSF13, TNF superfamily member 13
    Orthology source: HomoloGene, HGNC
  • Synonyms
    APRIL, CD256, TALL2, TALL-2, TNLG7B, TRDL-1, UNQ383/PRO715, ZTNF2
  • Links
    NCBI Gene ID: 8741
    neXtProt AC: NX_O75888
    UniProt: O75888

  • Chr Location
    17p13.1; chr17:7558292-7561608 (+)  GRCh38.p7

Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotypes from 3 alleles in 3 genetic backgrounds
    14 phenotypes from multigenic genotypes
    31 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous null mice are viable and fertile. No apparent defects of the immune system have been reported.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000089669 Ensembl Gene Model | MGI Sequence Detail 2939 C57BL/6J ±  kb
    transcript ENSMUST00000018896 Ensembl | MGI Sequence Detail 1407 Not Applicable  
    polypeptide ENSMUSP00000018896 Ensembl | MGI Sequence Detail 240 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 1
    References
    more
    • Summaries
      All 62
      Developmental Gene Expression 4
      Diseases 1
      Gene Ontology 6
      Phenotypes 31
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:261219 McWilliams TG, et al., TNF superfamily member APRIL enhances midbrain dopaminergic axon growth and contributes to the nigrostriatal projection in vivo. Exp Neurol. 2017 Dec;298(Pt A):97-103

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory