Btbd9
Gene Detail

Symbol Name ID

Btbd9 BTB (POZ) domain containing 9 MGI:1916625

Synonyms

1700023F20Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 17

15.62 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr17:30215524-30576287 bp, - strand From NCBI annotation of GRCm38   360764 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:14995  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Btbd9

Human homologs

Human Homolog		BTBD9, BTB (POZ) domain containing 9
NCBI Gene ID		114781
neXtProt AC		NX_Q96Q07
Human Synonyms		dJ322I12.1
Human Chr (Location)		6p21; chr6:38136227-38607924 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(54) : Targeted(2) Gene trapped(52)
Human Diseases Modeled Using Mouse Btbd9 (1)    Alleles Annotated to Human Diseases(1)   

Gene Ontology (GO) classifications

All GO classifications: (11 annotations)

Process	adult locomotory behavior, cell adhesion, ...
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (54)    Tissues (36)    Images (2)
Theiler Stages: 2, 3, 4, 5, 23, 24, 26, 28

Assay Type	Results
RNA in situ	39
RT-PCR	15

cDNA source data(104)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(106) cDNA(105) Primer pair(1)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000062202 (Evidence)
Entrez Gene	224671 (Evidence)
UniGene	41220
NIA Mouse Gene Index	U037638
Consensus CDS Project	CCDS28599.1
International Mouse Knockout Project Status	Btbd9

Sequences

Length	Strain/Species
genomic	224671	NCBI Gene Model | MGI Sequence Detail	360764	C57BL/6J
transcript	NM_027060	RefSeq | MGI Sequence Detail	6857	Not Specified
polypeptide	Q8C726	UniProt | EBI | MGI Sequence Detail	612	Not Applicable

All sequences(37) RefSeq(4) UniProt(8)

Polymorphisms

SNPs(1389 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR011705	BTB/Kelch-associated
InterPro	IPR013069	BTB/POZ
InterPro	IPR011333	BTB/POZ fold
InterPro	IPR000210	BTB/POZ-like
InterPro	IPR000421	Coagulation factor 5/8 C-terminal type domain
InterPro	IPR008979	Galactose-binding domain-like
Protein Ontology	PR:000030606	BTB/POZ domain-containing protein 9

Graphical View of Protein Domain Structure

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:187734 DeAndrade MP, et al., Enhanced hippocampal long-term potentiation and fear memory in Btbd9 mutant mice. PLoS One. 2012;7(4):e35518
All references(37)

Other accession IDs

MGI:2146876