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Pdgfrl
Gene Detail
Symbol

Name
ID
Pdgfrl
platelet-derived growth factor receptor-like
MGI:1916047
Synonyms
1110039P19Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 8
23.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:40926212-40990785 bp, + strand
From VEGA annotation of GRCm38

  64574 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4524  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: PDGFRL
Gene Tree: Pdgfrl

Human
homologs
PDGFRL, platelet-derived growth factor receptor-like
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 5157
neXtProt AC: NX_Q15198

Human Synonyms: PDGRL, PRLTS

Human Chr (Location): 8p22-p21.3; chr8:17576433-17643133 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human PDGFRL

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(6)
Incidental mutations (data from APF , CvDC )
Interactions
Pdgfrl interacts with 63 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component extracellular region
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (87)    Tissues (9)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 87
cDNA source data(5)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100493577, pdgfrl ; ZFIN pdgfrl    NEW 
Molecular
reagents
All nucleic(5) cDNA(5)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000031636 (Evidence)
Ensembl Gene Model ENSMUSG00000031595 (Evidence)
Entrez Gene 68797 (Evidence)
NIA Mouse Gene Index U009285
Consensus CDS Project CCDS22259.1
International Mouse Phenotyping Consortium Status Pdgfrl
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031636 VEGA Gene Model | MGI Sequence Detail 64574 C57BL/6J ±  kb
transcript OTTMUST00000078367 VEGA | MGI Sequence Detail 1548 Not Applicable 
polypeptide OTTMUSP00000041671 VEGA | MGI Sequence Detail 375 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(882 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013098 Immunoglobulin I-set
InterPro IPR007110 Immunoglobulin-like domain
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003599 Immunoglobulin subtype
Protein Ontology PR:000012492 platelet-derived growth factor receptor-like protein
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(26)
Other
accession IDs
MGI:2142732

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory