B230217C12Rik Gene Detail

Summary

• Symbol
  B230217C12Rik
• Name
  RIKEN cDNA B230217C12 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1915377
  NCBI Gene: 68127
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:97731961-97734263 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.11 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915377	protein coding gene	Chr11:97731606-97734925 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019043	protein coding gene	Chr11:100319990-100323309 (+)
A/J	MGP_AJ_G0019011	protein coding gene	Chr11:96169672-96173000 (+)
AKR/J	MGP_AKRJ_G0018981	protein coding gene	Chr11:99153938-99157266 (+)
BALB/cJ	MGP_BALBcJ_G0018984	protein coding gene	Chr11:96668997-96672324 (+)
C3H/HeJ	MGP_C3HHeJ_G0018798	protein coding gene	Chr11:99278830-99282149 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019437	protein coding gene	Chr11:103408123-103411442 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017068	protein coding gene	Chr11:93623734-93627051 (+)
CAST/EiJ	MGP_CASTEiJ_G0018352	protein coding gene	Chr11:100142788-100146121 (+)
CBA/J	MGP_CBAJ_G0018769	protein coding gene	Chr11:107692400-107695728 (+)
DBA/2J	MGP_DBA2J_G0018877	protein coding gene	Chr11:95724578-95727897 (+)
FVB/NJ	MGP_FVBNJ_G0018866	protein coding gene	Chr11:95218708-95222035 (+)
LP/J	MGP_LPJ_G0018947	protein coding gene	Chr11:100815084-100818403 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018893	protein coding gene	Chr11:107506177-107509504 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019477	protein coding gene	Chr11:99464063-99467391 (+)
PWK/PhJ	MGP_PWKPhJ_G0018124	protein coding gene	Chr11:96708561-96711908 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017914	protein coding gene	Chr11:99184104-99187430 (+)
WSB/EiJ	MGP_WSBEiJ_G0018402	protein coding gene	Chr11:99363486-99366817 (+)

Homology

• Gene Tree
  B230217C12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  1 involving B230217C12Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  14

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  7
• UniProt
  6
• CCDS
  CCDS36298.1

• Ensembl
  ENSMUSG00000050538 (Evidence)
• NCBI Gene
  68127

Representative Sequences			Length	Strain/Species
genomic	68127	NCBI Gene Model | MGI Sequence Detail	2303	C57BL/6J
transcript	NR_169087	RefSeq | MGI Sequence Detail	1517	C57BL/6
polypeptide	E9Q3Z1	UniProt | EBI | MGI Sequence Detail	139	Not Applicable

Protein
Information

• UniProt
  6 Sequences

Molecular
Reagents

• All nucleic 16

  Genomic 2

  cDNA 14

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:2144277

References

• Summaries
  All 28

  Phenotypes 8
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for B230217C12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104686	Chr11:97732108-97732185 (+)	186 bp