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Smarcc2 Gene Detail
Summary
  • Symbol
    Smarcc2
  • Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
  • Synonyms
    5930405J04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915344
    NCBI Gene: 68094
  • Gene Overview
    MyGene.info: SMARCC2
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:128459248-128490482 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 76.59 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    250 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915344
protein coding gene Chr10:128459236-128490583 (.)
129S1/SvImJ MGP_129S1SvImJ_G0017866
protein coding gene Chr10:132200819-132234015 (+)
A/J MGP_AJ_G0017841
protein coding gene Chr10:126887502-126918764 (+)
AKR/J MGP_AKRJ_G0017804
protein coding gene Chr10:130609130-130640547 (+)
BALB/cJ MGP_BALBcJ_G0017805
protein coding gene Chr10:127270650-127302308 (+)
C3H/HeJ MGP_C3HHeJ_G0017628
protein coding gene Chr10:130772795-130803931 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018260
protein coding gene Chr10:136675053-136709756 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015938
protein coding gene Chr10:120819694-120851662 (+)
CAST/EiJ MGP_CASTEiJ_G0017189
protein coding gene Chr10:131485306-131520024 (+)
CBA/J MGP_CBAJ_G0017598
protein coding gene Chr10:142226293-142275858 (+)
DBA/2J MGP_DBA2J_G0017704
protein coding gene Chr10:125951678-125985778 (+)
FVB/NJ MGP_FVBNJ_G0017699
protein coding gene Chr10:124876470-124907660 (+)
LP/J MGP_LPJ_G0017778
protein coding gene Chr10:132788213-132821963 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017727
protein coding gene Chr10:144825262-144859335 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018300
protein coding gene Chr10:130716072-130748915 (+)
PWK/PhJ MGP_PWKPhJ_G0016974
protein coding gene Chr10:126208700-126241989 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016763
protein coding gene Chr10:129812504-129847331 (+)
WSB/EiJ MGP_WSBEiJ_G0017248
protein coding gene Chr10:130928567-130962135 (+)



Homology
more
  • Human Ortholog
    SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAF170, CRACC2, Rsc8
  • Links
    NCBI Gene ID: 6601
    neXtProt AC: NX_Q8TAQ2
    UniProt: Q8TAQ2

  • Chr Location
    12q13.2; chr12:56161852-56189567 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 4 alleles in 6 genetic backgrounds
    4 phenotypes from multigenic genotypes
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted allele exhibit a slight increase in embryo weight at E13.5 and die shortly after birth (P0-P3). Mice homozygous for a conditional allele activated in the brain exhibit reduced cerebral cortical size and thickness.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025369 Ensembl Gene Model | MGI Sequence Detail 31235 C57BL/6J ±  kb
    transcript ENSMUST00000105235 Ensembl | MGI Sequence Detail 4032 Not Applicable  
    polypeptide ENSMUSP00000100868 Ensembl | MGI Sequence Detail 1213 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 214
      cDNA 213
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 13
      Gene Ontology 11
      Phenotypes 10
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:264370 Sima J, et al., Eda-activated RelB recruits an SWI/SNF (BAF) chromatin-remodeling complex and initiates gene transcription in skin appendage formation. Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):8173-8178

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory