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Sclt1 Gene Detail
Summary
  • Symbol
    Sclt1
  • Name
    sodium channel and clathrin linker 1
  • Synonyms
    2610207F23Rik, 4931421F20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914411
    NCBI Gene: 67161
Location & Maps
more
  • Sequence Map
    Chr3:41626720-41742514 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      115795 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 19.91 cM, cytoband C
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SCLT1, sodium channel and clathrin linker 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SCLT1, sodium channel and clathrin linker 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAP1A, CAP-1A
  • Links
    NCBI Gene ID: 132320
    neXtProt AC: NX_Q96NL6

  • Chr Location
    4q28.2; chr4:128874418-129093607 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 27031
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: SCLT1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Gene trapped
    3
  • Radiation induced
    2
  • Targeted
    2
  • Genomic Mutations
    2 involving Sclt1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033588 VEGA Gene Model | MGI Sequence Detail 115795 C57BL/6J ±  kb
transcript OTTMUST00000084610 VEGA | MGI Sequence Detail 3005 Not Applicable  
polypeptide OTTMUSP00000045621 VEGA | MGI Sequence Detail 688 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    892 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000014516 sodium channel and clathrin linker 1
Molecular
Reagents
less
  • All nucleic 31
    cDNA 31

    Microarray probesets 3
Other
Accession IDs
less
MGI:1918225
References
more
  • Summaries
    All 25
    Gene Ontology 5
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:206657 Ye X, et al., C2cd3 is critical for centriolar distal appendage assembly and ciliary vesicle docking in mammals. Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2164-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory