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Snhg16 Gene Detail
Summary
  • Symbol
    Snhg16
  • Name
    small nucleolar RNA host gene 16
  • Synonyms
    1810032O08Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1913543
    NCBI Gene: 66293
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:116562486-116566624 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 81.49 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913543
 lncRNA gene Chr11:116562430-116575898 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019436
 protein coding gene Chr11:120818033-120822184 (+)
A/J MGP_AJ_G0019404
 protein coding gene Chr11:115527023-115531507 (+)
AKR/J MGP_AKRJ_G0019375
 protein coding gene Chr11:118969789-118974081 (+)
BALB/cJ MGP_BALBcJ_G0019379
 protein coding gene Chr11:115923146-115927283 (+)
C3H/HeJ MGP_C3HHeJ_G0019185
 protein coding gene Chr11:119326067-119331342 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019828
 protein coding gene Chr11:124515266-124519406 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017452
 protein coding gene Chr11:112539220-112543263 (+)
CAST/EiJ MGP_CASTEiJ_G0018740
 protein coding gene Chr11:120699489-120703621 (+)
CBA/J MGP_CBAJ_G0019156
 protein coding gene Chr11:129429536-129435952 (+)
DBA/2J MGP_DBA2J_G0019268
 protein coding gene Chr11:114952382-114956522 (+)
FVB/NJ MGP_FVBNJ_G0019260
 protein coding gene Chr11:114465734-114471440 (+)
LP/J MGP_LPJ_G0019338
 protein coding gene Chr11:121201845-121207474 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019293
 protein coding gene Chr11:128461383-128465534 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019867
 protein coding gene Chr11:119626502-119630653 (+)
PWK/PhJ MGP_PWKPhJ_G0018504
 protein coding gene Chr11:116280573-116285116 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018297
 protein coding gene Chr11:119377183-119381524 (+)
WSB/EiJ MGP_WSBEiJ_G0018792
 protein coding gene Chr11:119595590-119601567 (+)



Homology
more
  • Human Ortholog
    SNHG16, small nucleolar RNA host gene 16
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG16, small nucleolar RNA host gene 16
  • Synonyms
    ELNAT1, Nbla10727, Nbla12061, ncRAN
  • Links
    NCBI Gene ID: 100507246

  • Chr Location
    chr17:76557727-76670985 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    51
  • RefSeq
    3
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 66293 NCBI Gene Model | MGI Sequence Detail 4139 C57BL/6J ±  kb
transcript NR_027821 RefSeq | MGI Sequence Detail 2014 C57BL/6  
polypeptide Q8C2B7 UniProt | EBI | MGI Sequence Detail 102 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:163097 Thoren LA, et al., UPF2 is a critical regulator of liver development, function and regeneration. PLoS One. 2010;5(7):e11650
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory