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Taf13 Gene Detail
Summary
  • Symbol
    Taf13
  • Name
    TATA-box binding protein associated factor 13
  • Synonyms
    1810004N01Rik, 2010309N11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913500
    NCBI Gene: 99730
  • Gene Overview
    MyGene.info: TAF13
Location & Maps
more
  • Sequence Map
    Chr3:108571698-108583222 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11525 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 47.34 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TAF13, TATA-box binding protein associated factor 13
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TAF13, TATA-box binding protein associated factor 13
    Orthology source: HGNC, HomoloGene
  • Synonyms
    TAF2K, TAFII18, TAF(II)18, TAFII-18
  • Links
    NCBI Gene ID: 6884
    neXtProt AC: NX_Q15543

  • Chr Location
    1p13.3; chr1:109064376-109076002 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    23
  • Chemically induced (other)
    1
  • Gene trapped
    18
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Taf13
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007260 VEGA Gene Model | MGI Sequence Detail 11525 C57BL/6J ±  kb
transcript OTTMUST00000016759 VEGA | MGI Sequence Detail 2443 Not Applicable  
polypeptide OTTMUSP00000007717 VEGA | MGI Sequence Detail 124 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    32 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000016018 transcription initiation factor TFIID subunit 13
  • InterPro Domains
    IPR009072 Histone-fold
    IPR003195 Transcription initiation factor IID, 18kDa subunit
Molecular
Reagents
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  • All nucleic 53
    cDNA 53

    Microarray probesets 6
Other
Accession IDs
less
MGI:1919442, MGI:2139811
References
more
  • Summaries
    All 33
    Developmental Gene Expression 6
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:228779 Alpern D, et al., TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation. Elife. 2014;3:e03613

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory