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Taf13 Gene Detail
Summary
  • Symbol
    Taf13
  • Name
    TATA-box binding protein associated factor 13
  • Synonyms
    1810004N01Rik, 2010309N11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913500
    NCBI Gene: 99730
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr3:108479015-108489384 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 3, 47.34 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    28 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913500
protein coding gene Chr3:108479014-108490538 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027781
protein coding gene Chr3:110132482-110148463 (+)
A/J MGP_AJ_G0027741
protein coding gene Chr3:106637663-106649411 (+)
AKR/J MGP_AKRJ_G0027706
protein coding gene Chr3:109230217-109241215 (+)
BALB/cJ MGP_BALBcJ_G0027753
protein coding gene Chr3:106337924-106349551 (+)
C3H/HeJ MGP_C3HHeJ_G0027483
protein coding gene Chr3:109590386-109601912 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028197
protein coding gene Chr3:114235607-114248283 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025535
protein coding gene Chr3:102775114-102787080 (+)
CAST/EiJ MGP_CASTEiJ_G0026939
protein coding gene Chr3:108983918-108993321 (+)
CBA/J MGP_CBAJ_G0027458
protein coding gene Chr3:118131075-118148920 (+)
DBA/2J MGP_DBA2J_G0027600
protein coding gene Chr3:105815715-105827241 (+)
FVB/NJ MGP_FVBNJ_G0027568
protein coding gene Chr3:103703937-103716748 (+)
LP/J MGP_LPJ_G0027707
protein coding gene Chr3:111549641-111563092 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027598
protein coding gene Chr3:124183912-124198559 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028252
protein coding gene Chr3:108834267-108849852 (+)
PWK/PhJ MGP_PWKPhJ_G0026665
protein coding gene Chr3:105568841-105580711 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026485
protein coding gene Chr3:106975831-106977418 (+)
WSB/EiJ MGP_WSBEiJ_G0027019
protein coding gene Chr3:109369463-109381212 (+)



Homology
more
  • Human Ortholog
    TAF13, TATA-box binding protein associated factor 13
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TAF13, TATA-box binding protein associated factor 13
  • Synonyms
    MRT60, TAF2K, TAFII18, TAF(II)18, TAFII-18
  • Links
    NCBI Gene ID: 6884
    neXtProt AC: NX_Q15543
    UniProt: Q15543

  • Chr Location
    1p13.3; chr1:109062496-109076012 (-)  GRCh38

Human Diseases
more
  • Diseases
    1 with human TAF13 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 99730 NCBI Gene Model | MGI Sequence Detail 10370 C57BL/6J ±  kb
transcript NM_025444 RefSeq | MGI Sequence Detail 1289 C57BL/6  
polypeptide P61216 UniProt | EBI | MGI Sequence Detail 124 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 55
    cDNA 54
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1919442, MGI:2139811
References
more
  • Summaries
    All 43
    Developmental Gene Expression 8
    Diseases 1
    Gene Ontology 6
    Phenotypes 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:337771 El-Saafin F, et al., Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic neuronal cell death. Cell Death Differ. 2022 May;29(5):1013-1027

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory