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Taf13
Gene Detail
 Symbol
Name
ID
Taf13
TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
MGI:1913500
Synonyms 1810004N01Rik, 2010309N11Rik
Feature Type protein coding gene
Genetic Map
Chromosome 3
47.34 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:108571698-108583222 bp, + strand
From VEGA annotation of GRCm38

  11525 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4126  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Taf13

Human
homologs
Human Homolog TAF13, TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
NCBI Gene ID 6884
neXtProt AC  NX_Q15543
Human Synonyms  TAF2K, TAFII18, TAF(II)18, TAFII-18
Human Chr (Location)  1p13.3; chr1:109064376-109076002 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(21) : Gene trapped(18) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Taf13 interacts with 248 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process regulation of transcription, DNA-templated, transcription, DNA-templated, ...
Component nucleolus, nucleus, ...
Function DNA binding, protein binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (76)    Tissues (25)    Images (21)
Theiler Stages: 17, 19, 23
Assay TypeResults
RNA in situ 76
cDNA source data(51)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(53) cDNA(53)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000007260 (Evidence)
Ensembl Gene ModelENSMUSG00000048100 (Evidence)
Entrez Gene99730 (Evidence)
UniGene24431
DFCITC1578007, TC1765759
DoTSDT.110536449, DT.531617
NIA Mouse Gene IndexU003739, U065829
Consensus CDS ProjectCCDS17764.1
International Mouse Knockout Project StatusTaf13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007260 VEGA Gene Model | MGI Sequence Detail 11525 C57BL/6J ±  kb
transcript OTTMUST00000016759 VEGA | MGI Sequence Detail 2443 Not Applicable 
polypeptide OTTMUSP00000007717 VEGA | MGI Sequence Detail 124 Not Applicable 

For the selected sequences
All sequences(29) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(32 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009072 Histone-fold
InterPro IPR003195 Transcription initiation factor IID, 18kDa subunit
Protein Ontology PR:000016018 transcription initiation factor TFIID subunit 13
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:181994 Kamileri I, et al., Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2995-3000
All references(35)
Other
accession IDs
MGI:1919442, MGI:2139811

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory