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Pcdhac2 Gene Detail
Summary
  • Symbol
    Pcdhac2
  • Name
    protocadherin alpha subfamily C, 2
  • Synonyms
    CNRc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891443
    NCBI Gene: 353237
  • Member of
    Pcdha cluster
  • Gene Overview
    MyGene.info: PCDHAC2
Location & Maps
more
  • Sequence Map
    Chr18:37143503-37187657 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      44155 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.46 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    PCDHAC2, protocadherin alpha subfamily C, 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PCDHAC2, protocadherin alpha subfamily C, 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PCDH-ALPHA-C2
  • Links
    NCBI Gene ID: 56134
    neXtProt AC: NX_Q9Y5I4

  • Chr Location
    5q31; chr5:140966162-141012344 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype reference
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Incidental Mutations
Mice homozygous for a reporter allele are viable and fertile with no apparent gross phenotype.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050647 VEGA Gene Model | MGI Sequence Detail 44155 C57BL/6J ±  kb
transcript OTTMUST00000128401 VEGA | MGI Sequence Detail 5888 Not Applicable  
polypeptide OTTMUSP00000069078 VEGA | MGI Sequence Detail 1006 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    516 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 1
    Other 1
References
more
  • Summaries
    All 15
    Developmental Gene Expression 2
    Phenotypes 1
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/27/2016
MGI 6.05
The Jackson Laboratory