About   Help   FAQ
Pcdhac2 Gene Detail
Summary
  • Symbol
    Pcdhac2
  • Name
    protocadherin alpha subfamily C, 2
  • Synonyms
    CNRc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891443
    NCBI Gene: 353237
  • Member of
    Pcdha cluster
  • Gene Overview
    MyGene.info: PCDHAC2
Location & Maps
more
  • Sequence Map
    Chr18:37143503-37187657 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      44155 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.46 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    PCDHAC2, protocadherin alpha subfamily C, 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PCDHAC2, protocadherin alpha subfamily C, 2
    Orthology source: HomoloGene
  • Synonyms
    PCDH-ALPHA-C2
  • Links
    NCBI Gene ID: 56134
    neXtProt AC: NX_Q9Y5I4

  • Chr Location
    5q31; chr5:140966162-141012344 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype reference
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Incidental Mutations
Mice homozygous for a reporter allele are viable and fertile with no apparent gross phenotype.
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050647 VEGA Gene Model | MGI Sequence Detail 44155 C57BL/6J ±  kb
transcript OTTMUST00000128401 VEGA | MGI Sequence Detail 5888 Not Applicable  
polypeptide OTTMUSP00000069078 VEGA | MGI Sequence Detail 1006 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    516 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 1
    Other 1
References
more
  • Summaries
    All 15
    Developmental Gene Expression 2
    Phenotypes 1
  • Earliest
    J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/15/2016
MGI 6.04
The Jackson Laboratory