About   Help   FAQ
Rhox9 Gene Detail
Summary
  • Symbol
    Rhox9
  • Name
    reproductive homeobox 9
  • Synonyms
    1600026O01Rik, Gpbox, Psx2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1890128
    NCBI Gene: 104384
  • Member of
    Rhox cluster
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:37899097-37901770 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 22.15 cM, cytoband A2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    14
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1890128
protein coding gene ChrX:37899097-37901770 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035655
protein coding gene ChrX:32831971-32834831 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0035557
protein coding gene ChrX:33557191-33560434 (+)
BALB/cJ MGP_BALBcJ_G0035624
protein coding gene ChrX:32590841-32597803 (-)
C3H/HeJ MGP_C3HHeJ_G0035329
protein coding gene ChrX:33162608-33165152 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036154
protein coding gene ChrX:33552530-33554804 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0035303
protein coding gene ChrX:34378506-34381111 (-)
DBA/2J MGP_DBA2J_G0035455
protein coding gene ChrX:32652912-32660450 (+)
FVB/NJ MGP_FVBNJ_G0035404
protein coding gene ChrX:32387026-32389526 (+)
LP/J MGP_LPJ_G0035544
protein coding gene ChrX:33210491-33212876 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035441
protein coding gene ChrX:34674080-34677254 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036172
protein coding gene ChrX:32765505-32770062 (+)
PWK/PhJ MGP_PWKPhJ_G0034321
protein coding gene ChrX:20777806-20781360 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034764
protein coding gene ChrX:32476915-32483519 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Mice homozygous for a trageted null mutation are viable and fertile with no gross morphological or histological abnormalities. No defects in the reproductive system were detected.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 104384 NCBI Gene Model | MGI Sequence Detail 2674 C57BL/6J ±  kb
transcript NM_023894 RefSeq | MGI Sequence Detail 898 Not Specified  
polypeptide NP_076383 RefSeq | MGI Sequence Detail 227 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR001356 Homeobox domain
    IPR009057 Homeobox-like domain superfamily
Molecular
Reagents
less
  • All nucleic 31
    cDNA 27
    Primer pair 3
    Other 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1925663
References
more
  • Summaries
    All 30
    Developmental Gene Expression 6
    Phenotypes 4
  • Earliest
    J:63116 Takasaki N, et al., Gpbox (Psx2), a homeobox gene preferentially expressed in female germ cells at the onset of sexual dimorphism in mice. Dev Biol. 2000 Jul 1;223(1):181-93
  • Latest
    J:229199 Song HW, et al., shRNA off-target effects in vivo: impaired endogenous siRNA expression and spermatogenic defects. PLoS One. 2015;10(3):e0118549

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/24/2020
MGI 6.15
The Jackson Laboratory