Snx3
Gene Detail

Symbol Name ID

Snx3 sorting nexin 3 MGI:1860188

Synonyms

SDP3

Feature Type

protein coding gene

Genetic Map

Chromosome 10

22.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr10:42502030-42535381 bp, + strand From VEGA annotation of GRCm38   33352 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:36144  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: sorting nexin, Snx3 type
Gene Tree: Snx3

Human homologs

Human Homolog		SNX3, sorting nexin 3
NCBI Gene ID		8724
neXtProt AC		NX_O60493
Human Synonyms		Grd19, MCOPS8, SDP3
Human Chr (Location)		6q21; chr6:108532717-108582464 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(21) : Targeted(1) Gene trapped(20)

Gene Ontology (GO) classifications

All GO classifications: (11 annotations)

Process	cell communication, protein transport, ...
Component	cytoplasm, early endosome, ...
Function	lipid binding, phosphatidylinositol-3-phosphate binding, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (181)    Tissues (52)    Images (101)
Theiler Stages: 15, 17, 23, 26, 28

Assay Type	Results
RNA in situ	181

cDNA source data(224)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(227) Genomic(1) cDNA(225) Primer pair(1)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000019461 (Evidence)
Ensembl Gene Model	ENSMUSG00000019804 (Evidence)
Entrez Gene	54198 (Evidence)
UniGene	277870
DFCI	TC1572609
DoTS	DT.495885, DT.91372150
NIA Mouse Gene Index	U011447
Consensus CDS Project	CCDS23812.1
International Mouse Knockout Project Status	Snx3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000019461	VEGA Gene Model | MGI Sequence Detail	33352	C57BL/6J
transcript	OTTMUST00000046474	VEGA | MGI Sequence Detail	1401	Not Applicable
polypeptide	OTTMUSP00000020985	VEGA | MGI Sequence Detail	162	Not Applicable

All sequences(43) RefSeq(2) UniProt(6)

Polymorphisms

SNPs(144 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001683	Phox homologous domain
Protein Ontology	PR:000015378	sorting nexin-3

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:168660 Mizutani R, et al., Developmental expression of sorting nexin 3 in the mouse central nervous system. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):33-40
All references(38)