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Snx3
Gene Detail
 Symbol
Name
ID
Snx3
sorting nexin 3
MGI:1860188
Synonyms SDP3
Feature Type protein coding gene
Genetic Map
Chromosome 10
22.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr10:42502030-42535381 bp, + strand
From VEGA annotation of GRCm38

  33352 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:36144  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: sorting nexin, Snx3 type
Gene Tree: Snx3

Human
homologs
Human Homolog SNX3, sorting nexin 3
NCBI Gene ID 8724
neXtProt AC  NX_O60493
Human Synonyms  Grd19, MCOPS8, SDP3
Human Chr (Location)  6q21; chr6:108211508-108261274 (-)  GRCh38
Alleles
and
phenotypes
All alleles(21) : Gene trapped(20) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process heme biosynthetic process, hemoglobin biosynthetic process, ...
Component cytoplasm, early endosome, ...
Function lipid binding, phosphatidylinositol-3-phosphate binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (188)    Tissues (59)    Images (101)
Theiler Stages: 13, 15, 17, 20, 23, 26, 28
Assay TypeResults
RNA in situ 188
cDNA source data(224)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(228) Genomic(1) cDNA(225) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000019461 (Evidence)
Ensembl Gene ModelENSMUSG00000019804 (Evidence)
Entrez Gene54198 (Evidence)
UniGene277870
DFCITC1572609
DoTSDT.495885, DT.91372150
NIA Mouse Gene IndexU011447
Consensus CDS ProjectCCDS23812.1
International Mouse Knockout Project StatusSnx3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000019461 VEGA Gene Model | MGI Sequence Detail 33352 C57BL/6J ±  kb
transcript OTTMUST00000046474 VEGA | MGI Sequence Detail 1401 Not Applicable 
polypeptide OTTMUSP00000020985 VEGA | MGI Sequence Detail 162 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(2) UniProt(6)
Polymorphisms SNPs within 2kb(169 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001683 Phox homologous domain
Protein Ontology PR:000015378 sorting nexin-3
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:198605 Chua RY, et al., SNX3 recruits to phagosomes and negatively regulates phagocytosis in dendritic cells. Immunology. 2013 May;139(1):30-47
All references(39)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory