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Nr4a1 Gene Detail
Summary
  • Symbol
    Nr4a1
  • Name
    nuclear receptor subfamily 4, group A, member 1
  • Synonyms
    Gfrp, GFRP1, Hbr1, Hbr-1, Hmr, N10, NGFI-B, NP10, Nur77, TIS1, TR3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352454
    NCBI Gene: 15370
  • Gene Overview
    MyGene.info: NR4A1
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr15:101254269-101274795 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      20527 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 56.64 cM, cytoband F
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    NR4A1, nuclear receptor subfamily 4 group A member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    NR4A1, nuclear receptor subfamily 4 group A member 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    GFRP1, HMR, N10, NAK-1, NGFIB, NP10, NUR77, TR3
  • Links
    NCBI Gene ID: 3164
    neXtProt AC: NX_P22736
    UniProt: P22736

  • Chr Location
    12q13.13; chr12:52022832-52059507 (+)  GRCh38.p7

Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotypes from 3 alleles in 4 genetic backgrounds
    22 phenotypes from multigenic genotypes
    90 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted null mutation are viable, fertile, and display a normal HPA axis function, as well as normal thymic and peripheral T cell deletion.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000023034 Ensembl Gene Model | MGI Sequence Detail 20527 C57BL/6J ±  kb
    transcript ENSMUST00000228985 Ensembl | MGI Sequence Detail 2553 Not Applicable  
    polypeptide ENSMUSP00000155225 Ensembl | MGI Sequence Detail 601 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      148 from dbSNP Build 142
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR001723 Nuclear hormone receptor
      IPR000536 Nuclear hormone receptor, ligand-binding domain
      IPR035500 Nuclear hormone receptor-like domain superfamily
      IPR003070 Orphan nuclear receptor
      IPR003071 Orphan nuclear receptor, HMR type
      IPR013088 Zinc finger, NHR/GATA-type
      IPR001628 Zinc finger, nuclear hormone receptor-type
    Molecular
    Reagents
    less
    • All nucleic 71
      Genomic 1
      cDNA 66
      Primer pair 3
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-10057, MGD-MRK-10641, MGD-MRK-10642, MGI:95699, MGI:96029
    References
    more
    • Summaries
      All 203
      Developmental Gene Expression 22
      Diseases 2
      Gene Ontology 22
      Phenotypes 90
    • Earliest
      J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
    • Latest
      J:264188 Noviski M, et al., IgM and IgD B cell receptors differentially respond to endogenous antigens and control B cell fate. Elife. 2018 Mar 9;7

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    09/11/2018
    MGI 6.12
    The Jackson Laboratory