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Homer2 Gene Detail
Summary
  • Symbol
    Homer2
  • Name
    homer scaffolding protein 2
  • Synonyms
    9330120H11Rik, CPD, Cupidin, Vesl-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1347354
    NCBI Gene: 26557
  • Gene Overview
    MyGene.info: HOMER2
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:81600481-81706925 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 45.71 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1089 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1347354
protein coding gene Chr7:81600481-81707527 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032433
protein coding gene Chr7:83670192-83787452 (-)
A/J MGP_AJ_G0032412
protein coding gene Chr7:81691595-81799649 (-)
AKR/J MGP_AKRJ_G0032348
protein coding gene Chr7:83499142-83618463 (-)
BALB/cJ MGP_BALBcJ_G0032424
protein coding gene Chr7:81350173-81460585 (-)
C3H/HeJ MGP_C3HHeJ_G0032137
protein coding gene Chr7:84113677-84227339 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032916
protein coding gene Chr7:86950014-87059784 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029924
protein coding gene Chr7:84172066-84276984 (-)
CAST/EiJ MGP_CASTEiJ_G0031465
protein coding gene Chr7:75051012-75154427 (-)
CBA/J MGP_CBAJ_G0032103
protein coding gene Chr7:89847910-89977247 (-)
DBA/2J MGP_DBA2J_G0032258
protein coding gene Chr7:80222887-80329579 (-)
FVB/NJ MGP_FVBNJ_G0032213
protein coding gene Chr7:80160967-80270766 (-)
LP/J MGP_LPJ_G0032339
protein coding gene Chr7:84901701-85018620 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032250
protein coding gene Chr7:89911364-90033307 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032934
protein coding gene Chr7:82907554-83028149 (-)
PWK/PhJ MGP_PWKPhJ_G0031185
protein coding gene Chr7:73436527-73546869 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031027
protein coding gene Chr7:69930939-70038658 (-)
WSB/EiJ MGP_WSBEiJ_G0031583
protein coding gene Chr7:83281559-83391692 (-)



Homology
more
  • Human Ortholog
    HOMER2, homer scaffold protein 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HOMER2, homer scaffold protein 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ACPD, CPD, DFNA68, HOMER-2, VESL-2
  • Links
    NCBI Gene ID: 9455
    neXtProt AC: NX_Q9NSB8
    UniProt: Q9NSB8

  • Chr Location
    15q25.2; chr15:82836946-82986176 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 3560
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: HOMER2
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human HOMER2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotypes from 1 allele in 2 genetic backgrounds
    1 phenotype from multigenic genotypes
    23 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous mutants exhibit an increase in intracellular calcium concentration and in the frequency of intracellular calcium oscillations in pancreatic acinar cells.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 26557 NCBI Gene Model | MGI Sequence Detail 106445 C57BL/6J ±  kb
    transcript NM_011983 RefSeq | MGI Sequence Detail 10999 C57BL/6  
    polypeptide Q9QWW1 UniProt | EBI | MGI Sequence Detail 354 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 86
      cDNA 83
      Primer pair 3

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2142248, MGI:2442918
    References
    more
    • Summaries
      All 58
      Developmental Gene Expression 5
      Gene Ontology 11
      Phenotypes 23
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:250078 Fujiwara K, et al., Deletion of JMJD2B in neurons leads to defective spine maturation, hyperactive behavior and memory deficits in mouse. Transl Psychiatry. 2016 Mar 29;6:e766

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory