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Hdac3 Gene Detail
Summary
  • Symbol
    Hdac3
  • Name
    histone deacetylase 3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1343091
    NCBI Gene: 15183
  • Gene Overview
    MyGene.info: HDAC3
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37936971-37954988 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.81 cM, cytoband B3
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    167 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1343091
protein coding gene Chr18:37935844-37954988 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024355
protein coding gene Chr18:36357597-36377656 (-)
A/J MGP_AJ_G0024322
protein coding gene Chr18:35105620-35124688 (-)
AKR/J MGP_AKRJ_G0024291
protein coding gene Chr18:36068543-36087592 (-)
BALB/cJ MGP_BALBcJ_G0024322
protein coding gene Chr18:35171513-35191045 (-)
C3H/HeJ MGP_C3HHeJ_G0024088
protein coding gene Chr18:36134899-36153822 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024764
protein coding gene Chr18:37657116-37677190 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022203
protein coding gene Chr18:35125624-35144812 (-)
CAST/EiJ MGP_CASTEiJ_G0023563
protein coding gene Chr18:36075710-36094693 (-)
CBA/J MGP_CBAJ_G0024058
protein coding gene Chr18:38771307-38790423 (-)
DBA/2J MGP_DBA2J_G0024188
protein coding gene Chr18:34705421-34725180 (-)
FVB/NJ MGP_FVBNJ_G0024154
protein coding gene Chr18:34416214-34435538 (-)
LP/J MGP_LPJ_G0024272
protein coding gene Chr18:36422394-36441501 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024185
protein coding gene Chr18:40024460-40043379 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024813
protein coding gene Chr18:35933817-35952716 (-)
PWK/PhJ MGP_PWKPhJ_G0023307
protein coding gene Chr18:34915300-34934316 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023112
protein coding gene Chr18:36150293-36169402 (-)
WSB/EiJ MGP_WSBEiJ_G0023626
protein coding gene Chr18:35833825-35852959 (-)



Homology
more
  • Human Ortholog
    HDAC3, histone deacetylase 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HDAC3, histone deacetylase 3
    Orthology source: HGNC, HomoloGene
  • Synonyms
    HD3, RPD3, RPD3-2
  • Links
    NCBI Gene ID: 8841
    neXtProt AC: NX_O15379
    UniProt: O15379

  • Chr Location
    5q31.3; chr5:141620876-141636860 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    46 phenotypes from 5 alleles in 8 genetic backgrounds
    64 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Disruption of this gene results in embryonic death at or around the time of gastrulation. Structural and functional abnormalities are also reported in mitochondria.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
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    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 15183 NCBI Gene Model | MGI Sequence Detail 18018 C57BL/6J ±  kb
    transcript NM_010411 RefSeq | MGI Sequence Detail 2005 C57BL/6  
    polypeptide O88895 UniProt | EBI | MGI Sequence Detail 424 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 126
      Genomic 1
      cDNA 119
      Primer pair 5
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2147071
    References
    more
    • Summaries
      All 186
      Developmental Gene Expression 29
      Gene Ontology 28
      Phenotypes 64
    • Earliest
      J:56106 Mahlknecht U, et al., Assignment of the histone deacetylase gene (Hdac3) to mouse chromosome 18B3 by in situ hybridization. Cytogenet Cell Genet. 1999;84(3-4):192-3
    • Latest
      J:266070 Zhang J, et al., HDAC3 inhibition in diabetic mice may activate Nrf2 preventing diabetes-induced liver damage and FGF21 synthesis and secretion leading to aortic protection. Am J Physiol Endocrinol Metab. 2018 Aug 1;315(2):E150-E162

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    12/04/2018
    MGI 6.13
    The Jackson Laboratory