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Rlim
Gene Detail
 Symbol
Name
ID
Rlim
ring finger protein, LIM domain interacting
MGI:1342291
Synonyms Ha1r, Rlim1, Rnf12
Feature Type protein coding gene
Genetic Map
Chromosome X
46.42 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
ChrX:103957163-103981284 bp, - strand
From VEGA annotation of GRCm38

  24122 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7920  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Rlim

Human
homologs
Human Homolog RLIM, ring finger protein, LIM domain interacting
NCBI Gene ID 51132
neXtProt AC  NX_Q9NVW2
Human Synonyms  NY-REN-43, RNF12
Human Chr (Location)  Xq13-q21; chrX:74582976-74614626 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(20) : Gene trapped(14) Targeted(6)
 
Mice heterozygous for a knock-out allele exhibit female-specific embryonic lethality when the allele is inherited maternally due to disruption in X-inactivation.
 
Phenotype Images(1)
Interactions
Rlim interacts with 494 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (34 annotations)
Process negative regulation of sequence-specific DNA binding transcription factor activity, negative regulation of transcription from RNA polymerase II promoter, ...
Component cytoplasm, nucleus
Function coenzyme F420-0 gamma-glutamyl ligase activity, coenzyme F420-2 alpha-glutamyl ligase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (12 records)
Data Summary: Results (38)    Tissues (38)    Images (4)
Theiler Stages: 16, 17, 19, 21, 23, 28
Assay TypeResults
RNA in situ 32
Northern blot 6
cDNA source data(22)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(23) Genomic(1) cDNA(22)
Microarray probesets(9)
Other database
links
VEGA Gene ModelOTTMUSG00000018399 (Evidence)
Ensembl Gene ModelENSMUSG00000056537 (Evidence)
Entrez Gene19820 (Evidence)
DFCITC1574693, TC1578325, TC1658266, TC1679755, TC1742235
DoTSDT.101214617, DT.533104
NIA Mouse Gene IndexU039604
EC6.3.2.-
Consensus CDS ProjectCCDS30331.1
International Mouse Knockout Project StatusRlim
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018399 VEGA Gene Model | MGI Sequence Detail 24122 C57BL/6J ±  kb
transcript OTTMUST00000044404 VEGA | MGI Sequence Detail 7439 Not Applicable 
polypeptide OTTMUSP00000019950 VEGA | MGI Sequence Detail 600 Not Applicable 

For the selected sequences
All sequences(68) RefSeq(12) UniProt(2)
Polymorphisms RFLP(1) : SNPs within 2kb(83 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
Protein Ontology PR:000014073 E3 ubiquitin-protein ligase RLIM
References (Earliest) J:56497 Bach I, et al., RLIM inhibits functional activity of LIM homeodomain transcription factors via recruitment of the histone deacetylase complex. Nat Genet. 1999 Aug;22(4):394-9
(Latest) J:205757 Kobayashi S, et al., Identification of an imprinted gene cluster in the X-inactivation center. PLoS One. 2013;8(8):e71222
All references(55)
Other
accession IDs
MGI:1353615, MGI:2147943, MGI:2148028

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory