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Itsn1 Gene Detail
Summary
  • Symbol
    Itsn1
  • Name
    intersectin 1 (SH3 domain protein 1A)
  • Synonyms
    Eh domain, SH3 domain regulator of endocytosis 1, EHSH1, Ese1, Intersectin-L, Sh3p17
  • Feature Type
    protein coding gene
  • IDs
    MGI:1338069
    NCBI Gene: 16443
  • Gene Overview
    MyGene.info: ITSN1
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:91729353-91920591 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 53.28 cM, cytoband C4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    932 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1338069
protein coding gene Chr16:91729281-91920597 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023050
protein coding gene Chr16:92763598-92972123 (+)
A/J MGP_AJ_G0023018
protein coding gene Chr16:88424332-88618733 (+)
AKR/J MGP_AKRJ_G0022988
protein coding gene Chr16:91099934-91300977 (+)
BALB/cJ MGP_BALBcJ_G0023020
protein coding gene Chr16:88951014-89143859 (+)
C3H/HeJ MGP_C3HHeJ_G0022781
protein coding gene Chr16:91669124-91867504 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023467
protein coding gene Chr16:95754238-95948971 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020969
protein coding gene Chr16:86120515-86312399 (+)
CAST/EiJ MGP_CASTEiJ_G0022300
protein coding gene Chr16:92233009-92435730 (+)
CBA/J MGP_CBAJ_G0022750
protein coding gene Chr16:99853666-100056123 (+)
DBA/2J MGP_DBA2J_G0022884
protein coding gene Chr16:88327846-88528974 (+)
FVB/NJ MGP_FVBNJ_G0022858
protein coding gene Chr16:87453230-87648277 (+)
LP/J MGP_LPJ_G0022954
protein coding gene Chr16:92462899-92659716 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022879
protein coding gene Chr16:104388381-104588220 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023485
protein coding gene Chr16:91616157-91815306 (+)
PWK/PhJ MGP_PWKPhJ_G0022045
protein coding gene Chr16:88508964-88701216 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021875
protein coding gene Chr16:91180282-91381522 (+)
WSB/EiJ MGP_WSBEiJ_G0022352
protein coding gene Chr16:91862441-92063195 (+)



Homology
more
  • Human Ortholog
    ITSN1, intersectin 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    ITSN1, intersectin 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ITSN, SH3D1A, SH3P17
  • Links
    NCBI Gene ID: 6453
    neXtProt AC: NX_Q15811
    UniProt: Q15811

  • Chr Location
    21q22.11; chr21:33642400-33899861 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2277
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;2 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ITSN1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    20 phenotypes from 3 alleles in 3 genetic backgrounds
    6 phenotypes from multigenic genotypes
    21 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous for a gene trapped allele exhibit embryonic lethal. Mice homozygous for a null allele exhibit some postnatal lethality and impaired vesicle recycling in surviving mice.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 16443 NCBI Gene Model | MGI Sequence Detail 191239 C57BL/6J ±  kb
    transcript NM_010587 RefSeq | MGI Sequence Detail 13976 C57BL/6  
    polypeptide Q9Z0R4 UniProt | EBI | MGI Sequence Detail 1714 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 28
      cDNA 25
      Primer pair 2
      Other 1

      Microarray probesets 13
    Other
    Accession IDs
    less
    MGI:2146349, MGI:2146354, MGI:2146410, MGI:2146490, MGI:2146499
    References
    more
    • Summaries
      All 68
      Developmental Gene Expression 11
      Gene Ontology 11
      Phenotypes 21
    • Earliest
      J:53505 Sengar AS, et al., The EH and SH3 domain Ese proteins regulate endocytosis by linking to dynamin and Eps15. EMBO J. 1999 Mar 1;18(5):1159-71
    • Latest
      J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory