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Ncor2 Gene Detail
Summary
  • Symbol
    Ncor2
  • Name
    nuclear receptor co-repressor 2
  • Synonyms
    SMRT, SMRTe
  • Feature Type
    protein coding gene
  • IDs
    MGI:1337080
    NCBI Gene: 20602
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:125017153-125179219 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 63.96 cM, cytoband F
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    775 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1337080
protein coding gene Chr5:125017153-125179219 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030108
protein coding gene Chr5:128823087-128995805 (-)
A/J MGP_AJ_G0030073
protein coding gene Chr5:123443199-123606536 (-)
AKR/J MGP_AKRJ_G0030009
protein coding gene Chr5:127431674-127599133 (-)
BALB/cJ MGP_BALBcJ_G0030084
protein coding gene Chr5:124773480-124938134 (-)
C3H/HeJ MGP_C3HHeJ_G0029801
protein coding gene Chr5:128032491-128208216 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030537
protein coding gene Chr5:133816366-133987231 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027763
protein coding gene Chr5:117979364-118142242 (-)
CAST/EiJ MGP_CASTEiJ_G0029210
protein coding gene Chr5:127169468-127344955 (-)
CBA/J MGP_CBAJ_G0029771
protein coding gene Chr5:139054016-139240724 (-)
DBA/2J MGP_DBA2J_G0029921
protein coding gene Chr5:123461263-123624485 (-)
FVB/NJ MGP_FVBNJ_G0029877
protein coding gene Chr5:122517396-122687679 (-)
LP/J MGP_LPJ_G0030010
protein coding gene Chr5:129342421-129513907 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029908
protein coding gene Chr5:142592024-142763331 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030578
protein coding gene Chr5:127049321-127222064 (-)
PWK/PhJ MGP_PWKPhJ_G0028924
protein coding gene Chr5:122292951-122462216 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028761
protein coding gene Chr5:124684504-124848859 (-)
WSB/EiJ MGP_WSBEiJ_G0029284
protein coding gene Chr5:127742344-127918298 (-)



Homology
more
  • Human Ortholog
    NCOR2, nuclear receptor corepressor 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NCOR2, nuclear receptor corepressor 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CTG26, N-CoR2, SMAP270, SMRT, SMRTE, SMRTE-tau, TNRC14, TRAC, TRAC1, TRAC-1
  • Links
    NCBI Gene ID: 9612
    neXtProt AC: NX_Q9Y618
    UniProt: Q9Y618

  • Chr Location
    12q24.31; chr12:124324411-124567464 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 31370
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: NCOR2
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with Ncor2 mouse models

Human Disease Mouse Models
      
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    63 phenotypes from 5 alleles in 5 genetic backgrounds
    4 phenotypes from multigenic genotypes
    8 images
    32 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele die before E16.5 of heart defects and exhibit neural defects.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 20602 NCBI Gene Model | MGI Sequence Detail 162067 C57BL/6J ±  kb
    transcript NM_011424 RefSeq | MGI Sequence Detail 8745 C57BL/6  
    polypeptide Q9WU42 UniProt | EBI | MGI Sequence Detail 2472 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 114
      cDNA 111
      Primer pair 2
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 93
      Developmental Gene Expression 15
      Diseases 1
      Gene Ontology 22
      Phenotypes 32
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:247701 Poleshko A, et al., Genome-Nuclear Lamina Interactions Regulate Cardiac Stem Cell Lineage Restriction. Cell. 2017 Oct 19;171(3):573-587.e14

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory