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Tsix
Gene Detail
 Symbol
Name
ID
Tsix
X (inactive)-specific transcript, opposite strand
MGI:1336196
Feature Type unclassified non-coding RNA gene
Genetic Map
Chromosome X
46.13 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
ChrX:103431517-103484957 bp, + strand
From VEGA annotation of GRCm38

  53441 bp   ±  kb flank

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Mouse Genome Browser
Vertebrate
homology
Gene Tree: Tsix
Alleles
and
phenotypes
All alleles(9) : Gene trapped(3) Targeted(6)
 
Maternal transmission of a null allele in this imprinted gene prevents Xist accumulation disrupting X-inactivation and causing early embryonic lethality.
 
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process chromatin-mediated maintenance of transcription, dosage compensation by inactivation of X chromosome, ...
External Resources: FuncBase
Expression
Literature Summary: (9 records)
Data Summary: Results (31)    Tissues (11)    Images (8)
Theiler Stages: 5, 7, 8, 21, 22, 24, 26, 28
Assay TypeResults
RNA in situ 10
RT-PCR 21
cDNA source data(2)
External Resources: GEO   ArrayExpress
Molecular
reagents
All nucleic(8) Genomic(1) cDNA(3) Primer pair(4)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000018294 (Evidence)
Ensembl Gene ModelENSMUSG00000085715 (Evidence)
Entrez Gene22097 (Evidence)
DFCITC1643100
DoTSDT.111035254
International Mouse Knockout Project StatusTsix
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018294 VEGA Gene Model | MGI Sequence Detail 53441 C57BL/6J ±  kb
transcript OTTMUST00000044200 VEGA | MGI Sequence Detail 4306 Not Applicable 

For the selected sequences
All sequences(11) RefSeq(1)
Polymorphisms SNPs within 2kb(111 from dbSNP Build 137)
References (Earliest) J:10451 Fingeroth JD, Comparative structure and evolution of murine CR2. The homolog of the human C3d/EBV receptor (CD21). J Immunol. 1990 May 1;144(9):3458-67
(Latest) J:206154 Payer B, et al., Tsix RNA and the germline factor, PRDM14, link X reactivation and stem cell reprogramming. Mol Cell. 2013 Dec 26;52(6):805-18
All references(49)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory