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Atp9a Gene Detail
Summary
  • Symbol
    Atp9a
  • Name
    ATPase, class II, type 9A
  • Synonyms
    Class II, IIa, mKIAA0611
  • Feature Type
    protein coding gene
  • IDs
    MGI:1330826
    NCBI Gene: 11981
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:168634438-168742370 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 88.99 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    723 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1330826
protein coding gene Chr2:168634438-168742409 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026928
protein coding gene Chr2:174491374-174627886 (-)
A/J MGP_AJ_G0026895
protein coding gene Chr2:167270890-167383836 (-)
AKR/J MGP_AKRJ_G0026866
protein coding gene Chr2:172266622-172384236 (-)
BALB/cJ MGP_BALBcJ_G0026904
protein coding gene Chr2:167632362-167746050 (-)
C3H/HeJ MGP_C3HHeJ_G0026646
protein coding gene Chr2:172632449-172755419 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027351
protein coding gene Chr2:179560583-179711132 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024722
protein coding gene Chr2:160580591-160690516 (-)
CAST/EiJ MGP_CASTEiJ_G0026104
protein coding gene Chr2:173130855-173258806 (-)
CBA/J MGP_CBAJ_G0026623
protein coding gene Chr2:186177260-186318316 (-)
DBA/2J MGP_DBA2J_G0026761
protein coding gene Chr2:166371962-166486183 (-)
FVB/NJ MGP_FVBNJ_G0026727
protein coding gene Chr2:164947931-165060758 (-)
LP/J MGP_LPJ_G0026862
protein coding gene Chr2:174499577-174621658 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026746
protein coding gene Chr2:189458952-189582748 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027408
protein coding gene Chr2:172195892-172315931 (-)
PWK/PhJ MGP_PWKPhJ_G0025841
protein coding gene Chr2:166068292-166178571 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025642
protein coding gene Chr2:171166079-171289480 (-)
WSB/EiJ MGP_WSBEiJ_G0026177
protein coding gene Chr2:173110716-173238020 (-)



Homology
more
  • Human Ortholog
    ATP9A, ATPase phospholipid transporting 9A (putative)
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ATP9A, ATPase phospholipid transporting 9A (putative)
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATPIIA
  • Links
    NCBI Gene ID: 10079
    neXtProt AC: NX_O75110
    UniProt: O75110

  • Chr Location
    20q13.2; chr20:51596775-51768411 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 11981 NCBI Gene Model | MGI Sequence Detail 107933 C57BL/6J ±  kb
transcript NM_001354978 RefSeq | MGI Sequence Detail 3868 C57BL/6  
polypeptide O70228 UniProt | EBI | MGI Sequence Detail 1047 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 202
    cDNA 200
    Primer pair 2

    Microarray probesets 6
References
more
  • Summaries
    All 37
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 9
  • Earliest
    J:47134 Halleck MS, et al., Multiple members of a third subfamily of P-type ATPases identified by genomic sequences and ESTs. Genome Res. 1998 Apr;8(4):354-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory